Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03375 ATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTAAGTCAAATTCCAGACGACCAATACAGTGGCGGCGTTGCCGGAGCTTCGACATCTTTCATAGAAACGTCATCGGGAGAGGGGAAGAACGATAGGAGGAAGTTAGAAAGAGGATTGGATTGGGAAGTTGCTGGTGATCATAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAATACTATGCACCGACACCATCTACTACGGTGGCTAACGAGACAGATGTATTTGGTTGTACGCACGATGATGTGCTTAGAGTTGGAGGAGATTCGAGAGCACAGGCAGGCGAGATGGCCGCTGGGGCTGGAGGTTCTTCTGCTAAGACCTGGGCCCAACAGACGGAGGAGAGTTATCAGCTGCAGTTGGCATTGGCGCTACGGCTTTCATCTGTGGCGACTTGTGCTGATGATCCCAATTTCTTGAATCCATTTCATGATGATTCAGCTTTGAGGAGGCTGATAGGTTCTGCTGAGAGTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCGTACTTAGACAAAGTCCCTGATGGGTTTTATCTAATCCATGGAGTGGATCCGTATGTATGGACTGTGTGCACTAGCCTGCCTGACAATGATCACATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTCAATTGAAGTTGTTCTGATTGATCGGTGCACTGATCCCAACTTAAAAGACCTCCAAATTTGGGTCCAAAACATTTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGACCAGCTTGCAAAACTTGTCTGCAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGACGCGTTGGTGTCCATCTGGAAGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTTTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGGTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTTGATTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCACCATTGCGATTTCCACGTCTAAATCCAGTAGAGCCTGCCACCGATTTCAGGTTACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCTTCATGTAATCATTCAGAAATTACTGTGGATGGAGAAGATGGCGCACTTCCATTGTATCCAAAGCAGTTTGATAGGAAATTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGATAGTGATGAAAAATCCATTTTACTGCATCCAAAAACTTCACAGCCTAACTCCCATGACAGAGATTTCCAACTGTATAAACCACGTGATAATTCTCATAGTGTTATTCAACCAACTGTCCTGGTTGAGGATTCAATCCCACTGAAGTACATTCCACATAATAACCGTGGAAGCATGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGATGTAAGGTTTGCAGCGGGAGGTCAGCTAATACCAAGCAATCGAAGTAATACACTTCCCCTTGGTGCGGAGGATTTGGACATTCCATGGGGTGATCTTGTTTTAAAAGAAAGAATAGGAGCAGGTTCCTTTGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAGGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCTCTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTGTCCATTGTAACCGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCACAAGTCAGGTGTCAAAGACATAGATGAAACACGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGACGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCATCCAAATCTGCAGCTGGAACGCCTGAATGGATGGCACCAGAAGTACTACGTGATGAACCATCAAATGAAAAGTCAGATGTTTATAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTCGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTTTCCAGCATAATGGAAACCTTGAAACCAATGACTAAACAAGCACCACCTCAACAAAGTCGTACAGACACACTCTCAGTTATGTGA 2613 44.93 MEMPGRRLNYTLLSQIPDDQYSGGVAGASTSFIETSSGEGKNDRRKLERGLDWEVAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDVFGCTHDDVLRVGGDSRAQAGEMAAGAGGSSAKTWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFHDDSALRRLIGSAESVSHRFWVNGCLSYLDKVPDGFYLIHGVDPYVWTVCTSLPDNDHMPSIESLKSVDPSTDSSIEVVLIDRCTDPNLKDLQIWVQNISCSSITTEEVVDQLAKLVCRSLGGSVSGEDALVSIWKECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLNPVEPATDFRLLAKQYFSDCQLLNVVFDEASSCNHSEITVDGEDGALPLYPKQFDRKFTNRSNQMLVTGDSDEKSILLHPKTSQPNSHDRDFQLYKPRDNSHSVIQPTVLVEDSIPLKYIPHNNRGSMQSLLDMSQPRMDSTMDVRFAAGGQLIPSNRSNTLPLGAEDLDIPWGDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSSIMETLKPMTKQAPPQQSRTDTLSVM* 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30479921 30489648 + CsaV3_3G036810.1 Csa03g03375 524280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03375 870 Pfam Ethylene-responsive protein kinase Le-CTR1 193 397 - -
Csa03g03375 870 Gene3D Phosphorylase Kinase; domain 1 590 675 - -
Csa03g03375 870 SUPERFAMILY Protein kinase-like (PK-like) 580 850 IPR011009 -
Csa03g03375 870 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 134 865 - -
Csa03g03375 870 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 134 865 - -
Csa03g03375 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Csa03g03375 870 ProSitePatterns Protein kinases ATP-binding region signature. 603 624 IPR017441 GO:0005524
Csa03g03375 870 CDD STKc_MAP3K-like 603 850 - -
Csa03g03375 870 Pfam Protein tyrosine and serine/threonine kinase 598 850 IPR001245 GO:0004672|GO:0006468
Csa03g03375 870 SMART serkin_6 597 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03375 870 PRINTS Tyrosine kinase catalytic domain signature 671 684 IPR001245 GO:0004672|GO:0006468
Csa03g03375 870 PRINTS Tyrosine kinase catalytic domain signature 711 729 IPR001245 GO:0004672|GO:0006468
Csa03g03375 870 PRINTS Tyrosine kinase catalytic domain signature 758 768 IPR001245 GO:0004672|GO:0006468
Csa03g03375 870 PRINTS Tyrosine kinase catalytic domain signature 777 799 IPR001245 GO:0004672|GO:0006468
Csa03g03375 870 PRINTS Tyrosine kinase catalytic domain signature 821 843 IPR001245 GO:0004672|GO:0006468
Csa03g03375 870 Gene3D Transferase(Phosphotransferase) domain 1 676 865 - -
Csa03g03375 870 ProSiteProfiles Protein kinase domain profile. 597 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03375 Csa06g02656 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03375 Csa-Chr3:30479921 Csa03g04499 Csa-Chr3:39171068 7.74E-69 dispersed
Csa01g02850 Csa-Chr1:25004539 Csa03g03375 Csa-Chr3:30479921 2.20E-32 transposed
Csa06g01318 Csa-Chr6:11010803 Csa03g03375 Csa-Chr3:30479921 2.21E-06 transposed
Csa03g03375 Csa-Chr3:30479921 Csa06g02656 Csa-Chr6:23385603 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78055 PF07714 PK_Tyr_Ser-Thr 1.70E-70 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03375 K14510 - csv:101208452 1732.61