Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03375 | ATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTAAGTCAAATTCCAGACGACCAATACAGTGGCGGCGTTGCCGGAGCTTCGACATCTTTCATAGAAACGTCATCGGGAGAGGGGAAGAACGATAGGAGGAAGTTAGAAAGAGGATTGGATTGGGAAGTTGCTGGTGATCATAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAATACTATGCACCGACACCATCTACTACGGTGGCTAACGAGACAGATGTATTTGGTTGTACGCACGATGATGTGCTTAGAGTTGGAGGAGATTCGAGAGCACAGGCAGGCGAGATGGCCGCTGGGGCTGGAGGTTCTTCTGCTAAGACCTGGGCCCAACAGACGGAGGAGAGTTATCAGCTGCAGTTGGCATTGGCGCTACGGCTTTCATCTGTGGCGACTTGTGCTGATGATCCCAATTTCTTGAATCCATTTCATGATGATTCAGCTTTGAGGAGGCTGATAGGTTCTGCTGAGAGTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCGTACTTAGACAAAGTCCCTGATGGGTTTTATCTAATCCATGGAGTGGATCCGTATGTATGGACTGTGTGCACTAGCCTGCCTGACAATGATCACATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTCAATTGAAGTTGTTCTGATTGATCGGTGCACTGATCCCAACTTAAAAGACCTCCAAATTTGGGTCCAAAACATTTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGACCAGCTTGCAAAACTTGTCTGCAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGACGCGTTGGTGTCCATCTGGAAGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTTTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGGTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTTGATTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCACCATTGCGATTTCCACGTCTAAATCCAGTAGAGCCTGCCACCGATTTCAGGTTACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCTTCATGTAATCATTCAGAAATTACTGTGGATGGAGAAGATGGCGCACTTCCATTGTATCCAAAGCAGTTTGATAGGAAATTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGATAGTGATGAAAAATCCATTTTACTGCATCCAAAAACTTCACAGCCTAACTCCCATGACAGAGATTTCCAACTGTATAAACCACGTGATAATTCTCATAGTGTTATTCAACCAACTGTCCTGGTTGAGGATTCAATCCCACTGAAGTACATTCCACATAATAACCGTGGAAGCATGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGATGTAAGGTTTGCAGCGGGAGGTCAGCTAATACCAAGCAATCGAAGTAATACACTTCCCCTTGGTGCGGAGGATTTGGACATTCCATGGGGTGATCTTGTTTTAAAAGAAAGAATAGGAGCAGGTTCCTTTGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAGGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCTCTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTGTCCATTGTAACCGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCACAAGTCAGGTGTCAAAGACATAGATGAAACACGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGACGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCATCCAAATCTGCAGCTGGAACGCCTGAATGGATGGCACCAGAAGTACTACGTGATGAACCATCAAATGAAAAGTCAGATGTTTATAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTCGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTTTCCAGCATAATGGAAACCTTGAAACCAATGACTAAACAAGCACCACCTCAACAAAGTCGTACAGACACACTCTCAGTTATGTGA | 2613 | 44.93 | MEMPGRRLNYTLLSQIPDDQYSGGVAGASTSFIETSSGEGKNDRRKLERGLDWEVAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDVFGCTHDDVLRVGGDSRAQAGEMAAGAGGSSAKTWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFHDDSALRRLIGSAESVSHRFWVNGCLSYLDKVPDGFYLIHGVDPYVWTVCTSLPDNDHMPSIESLKSVDPSTDSSIEVVLIDRCTDPNLKDLQIWVQNISCSSITTEEVVDQLAKLVCRSLGGSVSGEDALVSIWKECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLNPVEPATDFRLLAKQYFSDCQLLNVVFDEASSCNHSEITVDGEDGALPLYPKQFDRKFTNRSNQMLVTGDSDEKSILLHPKTSQPNSHDRDFQLYKPRDNSHSVIQPTVLVEDSIPLKYIPHNNRGSMQSLLDMSQPRMDSTMDVRFAAGGQLIPSNRSNTLPLGAEDLDIPWGDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSSIMETLKPMTKQAPPQQSRTDTLSVM* | 871 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30479921 | 30489648 | + | CsaV3_3G036810.1 | Csa03g03375 | 524280 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03375 | 870 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 193 | 397 | - | - | |
Csa03g03375 | 870 | Gene3D | Phosphorylase Kinase; domain 1 | 590 | 675 | - | - | |
Csa03g03375 | 870 | SUPERFAMILY | Protein kinase-like (PK-like) | 580 | 850 | IPR011009 | - | |
Csa03g03375 | 870 | PANTHER | MAP KINASE KINASE KINASE-LIKE PROTEIN | 134 | 865 | - | - | |
Csa03g03375 | 870 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 134 | 865 | - | - | |
Csa03g03375 | 870 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 717 | 729 | IPR008271 | GO:0004672|GO:0006468 | |
Csa03g03375 | 870 | ProSitePatterns | Protein kinases ATP-binding region signature. | 603 | 624 | IPR017441 | GO:0005524 | |
Csa03g03375 | 870 | CDD | STKc_MAP3K-like | 603 | 850 | - | - | |
Csa03g03375 | 870 | Pfam | Protein tyrosine and serine/threonine kinase | 598 | 850 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03375 | 870 | SMART | serkin_6 | 597 | 854 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g03375 | 870 | PRINTS | Tyrosine kinase catalytic domain signature | 671 | 684 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03375 | 870 | PRINTS | Tyrosine kinase catalytic domain signature | 711 | 729 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03375 | 870 | PRINTS | Tyrosine kinase catalytic domain signature | 758 | 768 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03375 | 870 | PRINTS | Tyrosine kinase catalytic domain signature | 777 | 799 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03375 | 870 | PRINTS | Tyrosine kinase catalytic domain signature | 821 | 843 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03375 | 870 | Gene3D | Transferase(Phosphotransferase) domain 1 | 676 | 865 | - | - | |
Csa03g03375 | 870 | ProSiteProfiles | Protein kinase domain profile. | 597 | 854 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g03375 | Csa06g02656 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03375 | Csa-Chr3:30479921 | Csa03g04499 | Csa-Chr3:39171068 | 7.74E-69 | dispersed | |
Csa01g02850 | Csa-Chr1:25004539 | Csa03g03375 | Csa-Chr3:30479921 | 2.20E-32 | transposed | |
Csa06g01318 | Csa-Chr6:11010803 | Csa03g03375 | Csa-Chr3:30479921 | 2.21E-06 | transposed | |
Csa03g03375 | Csa-Chr3:30479921 | Csa06g02656 | Csa-Chr6:23385603 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78055 | PF07714 | PK_Tyr_Ser-Thr | 1.70E-70 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03375 | K14510 | - | csv:101208452 | 1732.61 |