Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03379 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACTAGGGAACCGGGTTTGAAGAAGCCCCGACTTGCCGATGAGGCTGACCGCGGTGCCAATATTAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTGTCTGGGAACAATATTGTGCAACAACCCAGATTTCGACCAAGTGATAGGGATTCGGGAAGTAGTGATTCTGGTCGAGGGGGGTATCAGCCTCAGCCACCGCAGCATCAGGAGCTTGTGAGTCAGTACAGGACCGCCCTTGCTGAGCTGACTTTCAATTCCAAACCAATCATCACCAATTTGACCATAATCGCGGGTGAAAATCTTCAGGCTGCGAAGGCGATCGCTTCCACCATTTACGCCAACATTCTCGAGGTTCCTAGTGAGCAGAAGCTACCTTCACTTTATCTACTGGACAGTATTGTAAAGAATATTGGAAGAGATTACATAAAATACTTCGCAGCAAGGCTGCCGGAGGTATTCTGCAAAGCTTATAGGCAGGTTGACCCTTCTGTACATCCAAGTATGAGACATCTTTTTGGAACCTGGAAAGGAGTGTTTCCTCTTCAAACTCTGCAGATTATTGAGAAAGAACTTGGATTCGTGCCTAGTGGTAGTTCTTCTTCTGTGGCCATAACCTCGAAGCCAGATTTGCAGGCACAACGTCCAACTCCCCACAGTATCCATGTAAATCCGAAGTATATAGAGCGGCAACGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATAGCTACTGATGCTACTGGCGGTACAACAAATGTAAGTCAGGATGTTGCTCAAGCAAAAATGAGTACTGGACGTCCATGGGCGGATGCTCCTATTAAGGACATTCAGCGCCCCCTTAGAGATGCACAAAATGATATGGCACAAGAGAAGAATGTCACAGCTGGATATTCAGACTACGATTATGGTTCTGATCTTTCAAGGACATCAAGTGTTGGAAGAAGGGTCGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAACTTGTCTGAGAAACTATCTGGGCAAAGAAATGGGTTCAACATGAAGCTTGGATATGAAAATTACTCTGCACCCAAGTCTACAAACACCGGTGCACGTTTACTGCCTGTGCAAAATTTTTCGAGCAGCAGCAACAACAGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGACATGAACTCTATGTTGACAAGTCATGGTGCACCTGGTATCACCAGTAGCGCTGGAAAAGATCAATGGACTCCTGAGGATTCGGATAATTCGGGTATTGACAATAAGCATGTAAGTGTACGGGATACTGGGGCAAGTGTTGATAGAGAAGCTTCTAGTGATTCTCAGTCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAGCAAAGGTCATCAACGTGGCAACTGCAGGAGTCAATACCTCTGGATGGGCTGAGAGGTGGGGTTCCTAGAAAGAATTCAGGTCAGTCAGGAGGCTATGGTGCTACTCTTACTTCATTGTCAGGTACTAACTCTTCTGTGGATCAAATGGGAGGTCGACCACAGATCACACCATCTAGTATTGGGGCTTCAGGACATGGGTTTCTGAATAAAGGAAGTTCAGGGCCCCTTGGGAATGTAGGCCATCAAAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAGCCACCCTTGCACCAACGCTCATCTTCACAATTGTTAGTTGATCATGTTCCTCATCAAGTACATGACCATAAAACAACTTCATTTTCTAATCTTGATCCACGTAAAAGGCATATGCAGGATGCTGCCCTTGGCCTGCATCCCAGCGTTCGACCAGATAGTCTTCAAAAACCGCAGCCCCATGACCTACAAGCTTTAGCTTCATCCATACCCGGGTCTCAACCAAGGCACCAGTTCTCTTTATCTGAGTCGCTGAAACCTGATATCACACAGTCAGAACTTTCTAGTCAGCTTGCAGCACCAATTCCGGGCACCGATTTTGGACCATCGTCATCAGCTGGGACAGTACCAGATCGATTACCTGCAGAAATTTTGGGAAACCCAAGCACAAGTAGTTTGTTGGCTGCAGTAATGAAGAGTGGACTTTTTTCCAACCATTCAATAACCAGTAACATGCAGCAGAATATCAGCTTCCAAGATGTGGGAAATATGAAACCCCGTTCAAGCATTAAACCTCCTTTACCAAGCCGGTCTTCTCCTGCCCATACATTCTCGGAGCCAAAGATTCAGGGAGAATCTTCAGTAGGTCCTCCATCACTTGAAAGTCCATCAACTATGGTTAAGTTGTCTCAGACAAAGGTAGAAGAACCATCGTTGCCATCTGATCCACTTCCACCTTCATCTCCTATGGATAGTGCATCTACTGAAACTTCAAATGTGGTAAATGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGGCTTATCTCTGCTTCAAAAGGAGAATCAACGAATAGTGTGACATCCCAGATGCCTTCACAGCCTGAAAAGTTGAAGTCAGGTGATGCTGTGACTAGTTCTGTACCAGTTCCTTCCATCCCTATTTCTTCTTCCTGTCACTCACCTACAAAACTCGAATCACCTTCAAAAGCTGCTGCTAAGATCTCTACTAGTCCACCTCCATCTGCCACAACTGAGATAAACAACCTCATAGGTTTTGAGTTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGCGGACTCTTTGAAGATATTCCATATCAATGTAAGATCTGTGGTCTTAGACTGAAATGTGAAGAACATTTGGATATTCACTCACGGTGGCACACATTAAGAACCGAGGCAAACAATTCAAGTGGAGCACCAAGAAGATGGTATCCAAGTTCAGATGATTGGATTTCTGGAAATGCCAGATTTCTACTTGATGCTGTGACTTCTCTGGACGAATCCGATTTGATGGAAGAAGATAATGAGCCAATGGTTCCTGCTGATGAAGATCAATTTGCATGTGTTATATGTGGTGAACTTTTTGAAGATTCTTATAGTCAAGAGTTGGGTGATTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGTGGGTAGCGAGGTTGGAAGTACAAATGAACAAGTTGCTAGAGGACCTATTGTACACACAGCTTGTTTAACAGAAAGTTCAGTATATGACGTGGGACTAGCAACTGATATTAAGATGGAAATGGATGTATGA 3255 45.07 MEMESSRRPFDRTREPGLKKPRLADEADRGANINGRPFPQRPVVSGNNIVQQPRFRPSDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAIASTIYANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPLQTLQIIEKELGFVPSGSSSSVAITSKPDLQAQRPTPHSIHVNPKYIERQRLQQSGRVKGIATDATGGTTNVSQDVAQAKMSTGRPWADAPIKDIQRPLRDAQNDMAQEKNVTAGYSDYDYGSDLSRTSSVGRRVVDEGRDKPWSSAGSNLSEKLSGQRNGFNMKLGYENYSAPKSTNTGARLLPVQNFSSSSNNRVLSTNWKNSEEEEFMWGDMNSMLTSHGAPGITSSAGKDQWTPEDSDNSGIDNKHVSVRDTGASVDREASSDSQSSEQRELGDSGQQRSSTWQLQESIPLDGLRGGVPRKNSGQSGGYGATLTSLSGTNSSVDQMGGRPQITPSSIGASGHGFLNKGSSGPLGNVGHQRFPSRSVAFPSGQPPLHQRSSSQLLVDHVPHQVHDHKTTSFSNLDPRKRHMQDAALGLHPSVRPDSLQKPQPHDLQALASSIPGSQPRHQFSLSESLKPDITQSELSSQLAAPIPGTDFGPSSSAGTVPDRLPAEILGNPSTSSLLAAVMKSGLFSNHSITSNMQQNISFQDVGNMKPRSSIKPPLPSRSSPAHTFSEPKIQGESSVGPPSLESPSTMVKLSQTKVEEPSLPSDPLPPSSPMDSASTETSNVVNDASSPISNLLSSLVAKGLISASKGESTNSVTSQMPSQPEKLKSGDAVTSSVPVPSIPISSSCHSPTKLESPSKAAAKISTSPPPSATTEINNLIGFEFSSHVIRKFHPSVISGLFEDIPYQCKICGLRLKCEEHLDIHSRWHTLRTEANNSSGAPRRWYPSSDDWISGNARFLLDAVTSLDESDLMEEDNEPMVPADEDQFACVICGELFEDSYSQELGDWMFKGAMYITIPSVGSEVGSTNEQVARGPIVHTACLTESSVYDVGLATDIKMEMDV* 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30500311 30507807 + CsaV3_3G036850.1 Csa03g03379 524284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03379 1084 SUPERFAMILY ENTH/VHS domain 78 204 IPR008942 -
Csa03g03379 1084 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 728 808 - -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 412 575 - -
Csa03g03379 1084 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1072 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Csa03g03379 1084 MobiDBLite consensus disorder prediction 412 433 - -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 830 858 - -
Csa03g03379 1084 Pfam CID domain 88 193 IPR006569 -
Csa03g03379 1084 SMART 558neu5 81 203 IPR006569 -
Csa03g03379 1084 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1072 - -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 631 687 - -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 453 483 - -
Csa03g03379 1084 CDD CID_Pcf11 83 195 - -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 738 783 - -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 44 78 - -
Csa03g03379 1084 Gene3D - 73 203 IPR008942 -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 500 538 - -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 1 78 - -
Csa03g03379 1084 ProSitePatterns Zinc finger C2H2 type domain signature. 930 950 IPR013087 -
Csa03g03379 1084 SUPERFAMILY beta-beta-alpha zinc fingers 927 1021 IPR036236 -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 434 452 - -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 631 665 - -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 794 808 - -
Csa03g03379 1084 MobiDBLite consensus disorder prediction 1 29 - -
Csa03g03379 1084 ProSiteProfiles Zinc finger C2H2 type domain profile. 928 955 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01359 Csa-Chr1:8871150 Csa03g03379 Csa-Chr3:30500311 1.48E-32 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03379 K14400 - csv:101223169 2105.1