Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03379 | ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACTAGGGAACCGGGTTTGAAGAAGCCCCGACTTGCCGATGAGGCTGACCGCGGTGCCAATATTAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTGTCTGGGAACAATATTGTGCAACAACCCAGATTTCGACCAAGTGATAGGGATTCGGGAAGTAGTGATTCTGGTCGAGGGGGGTATCAGCCTCAGCCACCGCAGCATCAGGAGCTTGTGAGTCAGTACAGGACCGCCCTTGCTGAGCTGACTTTCAATTCCAAACCAATCATCACCAATTTGACCATAATCGCGGGTGAAAATCTTCAGGCTGCGAAGGCGATCGCTTCCACCATTTACGCCAACATTCTCGAGGTTCCTAGTGAGCAGAAGCTACCTTCACTTTATCTACTGGACAGTATTGTAAAGAATATTGGAAGAGATTACATAAAATACTTCGCAGCAAGGCTGCCGGAGGTATTCTGCAAAGCTTATAGGCAGGTTGACCCTTCTGTACATCCAAGTATGAGACATCTTTTTGGAACCTGGAAAGGAGTGTTTCCTCTTCAAACTCTGCAGATTATTGAGAAAGAACTTGGATTCGTGCCTAGTGGTAGTTCTTCTTCTGTGGCCATAACCTCGAAGCCAGATTTGCAGGCACAACGTCCAACTCCCCACAGTATCCATGTAAATCCGAAGTATATAGAGCGGCAACGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATAGCTACTGATGCTACTGGCGGTACAACAAATGTAAGTCAGGATGTTGCTCAAGCAAAAATGAGTACTGGACGTCCATGGGCGGATGCTCCTATTAAGGACATTCAGCGCCCCCTTAGAGATGCACAAAATGATATGGCACAAGAGAAGAATGTCACAGCTGGATATTCAGACTACGATTATGGTTCTGATCTTTCAAGGACATCAAGTGTTGGAAGAAGGGTCGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAACTTGTCTGAGAAACTATCTGGGCAAAGAAATGGGTTCAACATGAAGCTTGGATATGAAAATTACTCTGCACCCAAGTCTACAAACACCGGTGCACGTTTACTGCCTGTGCAAAATTTTTCGAGCAGCAGCAACAACAGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGACATGAACTCTATGTTGACAAGTCATGGTGCACCTGGTATCACCAGTAGCGCTGGAAAAGATCAATGGACTCCTGAGGATTCGGATAATTCGGGTATTGACAATAAGCATGTAAGTGTACGGGATACTGGGGCAAGTGTTGATAGAGAAGCTTCTAGTGATTCTCAGTCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAGCAAAGGTCATCAACGTGGCAACTGCAGGAGTCAATACCTCTGGATGGGCTGAGAGGTGGGGTTCCTAGAAAGAATTCAGGTCAGTCAGGAGGCTATGGTGCTACTCTTACTTCATTGTCAGGTACTAACTCTTCTGTGGATCAAATGGGAGGTCGACCACAGATCACACCATCTAGTATTGGGGCTTCAGGACATGGGTTTCTGAATAAAGGAAGTTCAGGGCCCCTTGGGAATGTAGGCCATCAAAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAGCCACCCTTGCACCAACGCTCATCTTCACAATTGTTAGTTGATCATGTTCCTCATCAAGTACATGACCATAAAACAACTTCATTTTCTAATCTTGATCCACGTAAAAGGCATATGCAGGATGCTGCCCTTGGCCTGCATCCCAGCGTTCGACCAGATAGTCTTCAAAAACCGCAGCCCCATGACCTACAAGCTTTAGCTTCATCCATACCCGGGTCTCAACCAAGGCACCAGTTCTCTTTATCTGAGTCGCTGAAACCTGATATCACACAGTCAGAACTTTCTAGTCAGCTTGCAGCACCAATTCCGGGCACCGATTTTGGACCATCGTCATCAGCTGGGACAGTACCAGATCGATTACCTGCAGAAATTTTGGGAAACCCAAGCACAAGTAGTTTGTTGGCTGCAGTAATGAAGAGTGGACTTTTTTCCAACCATTCAATAACCAGTAACATGCAGCAGAATATCAGCTTCCAAGATGTGGGAAATATGAAACCCCGTTCAAGCATTAAACCTCCTTTACCAAGCCGGTCTTCTCCTGCCCATACATTCTCGGAGCCAAAGATTCAGGGAGAATCTTCAGTAGGTCCTCCATCACTTGAAAGTCCATCAACTATGGTTAAGTTGTCTCAGACAAAGGTAGAAGAACCATCGTTGCCATCTGATCCACTTCCACCTTCATCTCCTATGGATAGTGCATCTACTGAAACTTCAAATGTGGTAAATGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGGCTTATCTCTGCTTCAAAAGGAGAATCAACGAATAGTGTGACATCCCAGATGCCTTCACAGCCTGAAAAGTTGAAGTCAGGTGATGCTGTGACTAGTTCTGTACCAGTTCCTTCCATCCCTATTTCTTCTTCCTGTCACTCACCTACAAAACTCGAATCACCTTCAAAAGCTGCTGCTAAGATCTCTACTAGTCCACCTCCATCTGCCACAACTGAGATAAACAACCTCATAGGTTTTGAGTTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGCGGACTCTTTGAAGATATTCCATATCAATGTAAGATCTGTGGTCTTAGACTGAAATGTGAAGAACATTTGGATATTCACTCACGGTGGCACACATTAAGAACCGAGGCAAACAATTCAAGTGGAGCACCAAGAAGATGGTATCCAAGTTCAGATGATTGGATTTCTGGAAATGCCAGATTTCTACTTGATGCTGTGACTTCTCTGGACGAATCCGATTTGATGGAAGAAGATAATGAGCCAATGGTTCCTGCTGATGAAGATCAATTTGCATGTGTTATATGTGGTGAACTTTTTGAAGATTCTTATAGTCAAGAGTTGGGTGATTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGTGGGTAGCGAGGTTGGAAGTACAAATGAACAAGTTGCTAGAGGACCTATTGTACACACAGCTTGTTTAACAGAAAGTTCAGTATATGACGTGGGACTAGCAACTGATATTAAGATGGAAATGGATGTATGA | 3255 | 45.07 | MEMESSRRPFDRTREPGLKKPRLADEADRGANINGRPFPQRPVVSGNNIVQQPRFRPSDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAIASTIYANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPLQTLQIIEKELGFVPSGSSSSVAITSKPDLQAQRPTPHSIHVNPKYIERQRLQQSGRVKGIATDATGGTTNVSQDVAQAKMSTGRPWADAPIKDIQRPLRDAQNDMAQEKNVTAGYSDYDYGSDLSRTSSVGRRVVDEGRDKPWSSAGSNLSEKLSGQRNGFNMKLGYENYSAPKSTNTGARLLPVQNFSSSSNNRVLSTNWKNSEEEEFMWGDMNSMLTSHGAPGITSSAGKDQWTPEDSDNSGIDNKHVSVRDTGASVDREASSDSQSSEQRELGDSGQQRSSTWQLQESIPLDGLRGGVPRKNSGQSGGYGATLTSLSGTNSSVDQMGGRPQITPSSIGASGHGFLNKGSSGPLGNVGHQRFPSRSVAFPSGQPPLHQRSSSQLLVDHVPHQVHDHKTTSFSNLDPRKRHMQDAALGLHPSVRPDSLQKPQPHDLQALASSIPGSQPRHQFSLSESLKPDITQSELSSQLAAPIPGTDFGPSSSAGTVPDRLPAEILGNPSTSSLLAAVMKSGLFSNHSITSNMQQNISFQDVGNMKPRSSIKPPLPSRSSPAHTFSEPKIQGESSVGPPSLESPSTMVKLSQTKVEEPSLPSDPLPPSSPMDSASTETSNVVNDASSPISNLLSSLVAKGLISASKGESTNSVTSQMPSQPEKLKSGDAVTSSVPVPSIPISSSCHSPTKLESPSKAAAKISTSPPPSATTEINNLIGFEFSSHVIRKFHPSVISGLFEDIPYQCKICGLRLKCEEHLDIHSRWHTLRTEANNSSGAPRRWYPSSDDWISGNARFLLDAVTSLDESDLMEEDNEPMVPADEDQFACVICGELFEDSYSQELGDWMFKGAMYITIPSVGSEVGSTNEQVARGPIVHTACLTESSVYDVGLATDIKMEMDV* | 1085 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30500311 | 30507807 | + | CsaV3_3G036850.1 | Csa03g03379 | 524284 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03379 | 1084 | SUPERFAMILY | ENTH/VHS domain | 78 | 204 | IPR008942 | - | |
Csa03g03379 | 1084 | ProSiteProfiles | CID domain profile. | 78 | 206 | IPR006569 | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 728 | 808 | - | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 412 | 575 | - | - | |
Csa03g03379 | 1084 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 3 | 1072 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 412 | 433 | - | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 830 | 858 | - | - | |
Csa03g03379 | 1084 | Pfam | CID domain | 88 | 193 | IPR006569 | - | |
Csa03g03379 | 1084 | SMART | 558neu5 | 81 | 203 | IPR006569 | - | |
Csa03g03379 | 1084 | PANTHER | RNA POLYMERASE II-BINDING DOMAIN PROTEIN | 3 | 1072 | - | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 631 | 687 | - | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 453 | 483 | - | - | |
Csa03g03379 | 1084 | CDD | CID_Pcf11 | 83 | 195 | - | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 738 | 783 | - | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 44 | 78 | - | - | |
Csa03g03379 | 1084 | Gene3D | - | 73 | 203 | IPR008942 | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 500 | 538 | - | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
Csa03g03379 | 1084 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 930 | 950 | IPR013087 | - | |
Csa03g03379 | 1084 | SUPERFAMILY | beta-beta-alpha zinc fingers | 927 | 1021 | IPR036236 | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 434 | 452 | - | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 631 | 665 | - | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 794 | 808 | - | - | |
Csa03g03379 | 1084 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Csa03g03379 | 1084 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 928 | 955 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01359 | Csa-Chr1:8871150 | Csa03g03379 | Csa-Chr3:30500311 | 1.48E-32 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03379 | K14400 | - | csv:101223169 | 2105.1 |