Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03386 ATGGACGATCAATATCCCCTCTCCGATCTCCGCCACCTCTTGAGTACGCCTCCATCTCGTTCCCATTTCCCTTCTTCTTCCTCAATTCCCCACCATGATCTCTCCTCCTCCGCCTTTCGCCACCACCATACTCCCTACGACCTCATCATGATGATGCCACGCGACACTCCCCTCCCCGACTTTCGCTCCGATTCCACCACTACACCATCTGCTTCCATACTCTCCCCTCACCCTGTTCACAACGCTTTCGACCCCGAAACCGCGTCCATCGCTGCCGACTGCGCTACAGCTCGATGGCCTCGACAAGAAACCCTTACGCTCTTGGAAATTAGATCTCGACTTGATTCTAAGTTCAAAGAAGCTAACCAAAAAGGCCCCCTTTGGGATGAAGTTTCTAGAATTATGGCTGAGGAACACAATTATCAAAGAAGTGGGAAAAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAAACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAATTACAGATTCTTTAGGCAATTGGAAGCTCTCTATGGTGAAACAAGCAATTCTCCTTCACTTCCAGATTCCCATTTTGTTGGAGACACAAACCTCAGATTCCAACAAAATGGAACTAACAATCCAACCGCCTCCGCTCCGATGAGCCACGAAGCTCACCAGAAGCATTACTGCGATAGCCTTAGCCTATCCAACACCTCCGAGTTTGAAACCTCGGCTTCATCAGATGGCAATGACGACCTCGGCTCAGTTGGTGTAATGGATAACGATTCAATGGAGAAAAGAAGGAAGAAGCGAGGCGGAAAATGCTGGAAGGCTAAAATTAAACAGTTCATCGACTCGCAAATGAGGAAGCTAATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGAATGATTCGGGATGAGGAATGGAGAAGACAAGAAGTGTCAAGAATGGATAGGGAGAGAAGCTTTTGGGCAAAGGAGAGAGCATGGATAGAATCTAGAGATGCGGCATTAATGGATGCATTACAAAGGCTAACAGGAAGAGAATTGAGAGATAATAATCAATACAACTCCTCGCCTGACCACGGATTAATTGTAGCCGAGCATCATCGAAACAATAACGAGAATCAAAACGAAGACGGGAGCGAAATACTAAACAACAACACAGCTAGAGAATTATTAGCAGACAACAACGATAATTACCAAAGGAAAATAATTGATAATCATGGCAACAAGAAACGCAAGGAGAATTCAACATCAACAACCACCACCTACAATCTTTACTTCCAACAACACACAGATTCCTCCCTCTATAGCCGTGGCGGTGGCGGACAGTACGACGGTGCCACCCACATCAAGGAACAAAGTCCAAATAGTTCGAACGCAGGTGGCAGCGGTGGTGGTCATGTGGTGCAAGATAACTGCTTCAGGTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGGTTTGTGGGAAAATTTTGGCCTCAAACTCAACAATGGAAGTGACCAAACTTGA 1554 45.11 MDDQYPLSDLRHLLSTPPSRSHFPSSSSIPHHDLSSSAFRHHHTPYDLIMMMPRDTPLPDFRSDSTTTPSASILSPHPVHNAFDPETASIAADCATARWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNSPSLPDSHFVGDTNLRFQQNGTNNPTASAPMSHEAHQKHYCDSLSLSNTSEFETSASSDGNDDLGSVGVMDNDSMEKRRKKRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKERMIRDEEWRRQEVSRMDRERSFWAKERAWIESRDAALMDALQRLTGRELRDNNQYNSSPDHGLIVAEHHRNNNENQNEDGSEILNNNTARELLADNNDNYQRKIIDNHGNKKRKENSTSTTTTYNLYFQQHTDSSLYSRGGGGQYDGATHIKEQSPNSSNAGGSGGGHVVQDNCFRFLMGEGDQSQSGLWENFGLKLNNGSDQT* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30539205 30542320 - CsaV3_3G036920.1 Csa03g03386 524291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03386 517 CDD GT1 98 163 - -
Csa03g03386 517 PANTHER - 16 404 - -
Csa03g03386 517 PANTHER - 419 504 - -
Csa03g03386 517 MobiDBLite consensus disorder prediction 241 272 - -
Csa03g03386 517 MobiDBLite consensus disorder prediction 448 479 - -
Csa03g03386 517 MobiDBLite consensus disorder prediction 1 36 - -
Csa03g03386 517 Pfam Myb/SANT-like DNA-binding domain 98 184 IPR044822 -
Csa03g03386 517 ProSiteProfiles Myb-like domain profile. 98 156 IPR001005 -
Csa03g03386 517 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 16 404 - -
Csa03g03386 517 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 419 504 - -
Csa03g03386 517 Coils Coil 293 320 - -
Csa03g03386 517 Gene3D - 99 161 - -
Csa03g03386 517 MobiDBLite consensus disorder prediction 463 479 - -
Csa03g03386 517 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03386 Csa-Chr3:30539205 Csa05g02745 Csa-Chr5:28184757 5.26E-85 dispersed
Csa03g03386 Csa-Chr3:30539205 Csa03g03064 Csa-Chr3:28871011 1.18E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31338 PF13837 Myb_DNA-bind_4 2.50E-19 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03386 - - csv:101209675 999.579