Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03387 ATGGCTTCTTCTTCTGGCCGCCACCCCGTCTACCGTGGCGTTCGCCGTCGCAACACTGGCAAATGGGTCTCTGAAATCCGCGAGCCAAGGAAGCCCAACCGTATTTGGCTCGGAACTTTTCCCACCGCTGAAATGGCTGCTGTTGCTTACGACGTTGCCGCCCTTGCCCTAAAAGGCCAAGACGCCGAACTTAATTTCCCTAATTCCGCCTCGTCTCTCCCCATCCCCGCTTCTAGGTCACCATCGGATATTCAAGCTGCAGCTGCGTCTGCTGCTGCTGCCCTTGGAGCGGCTGCAGCTGCCATGGAGGCACGGAACAATATCAGTTCTCGTCGTGGAAGTCATTCCGAAGACGTCATGTACGGAGCAAGATATGGTCAAGAATATGAATTGGGAAATCAGTTCATGGACGAGGACTTGATCTTTGATATGCCTAATGTTCTAATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAACAACCATGGCGGAGACGACAACCGCGACTTCGGCACTGACCAAAATCTTTGGAATTTTCCCTAA 552 52.36 MASSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPIPASRSPSDIQAAAASAAAALGAAAAAMEARNNISSRRGSHSEDVMYGARYGQEYELGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDNRDFGTDQNLWNFP* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30556186 30557157 + CsaV3_3G036930.1 Csa03g03387 524292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03387 183 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Csa03g03387 183 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Csa03g03387 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 3 183 - -
Csa03g03387 183 Pfam AP2 domain 9 59 IPR001471 GO:0003700|GO:0006355
Csa03g03387 183 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
Csa03g03387 183 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Csa03g03387 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 183 - -
Csa03g03387 183 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Csa03g03387 183 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677
Csa03g03387 183 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03387 Csa06g02658 CCT
Csa03g03387 Csa06g02658 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00371 Csa-Chr3:3131985 Csa03g03387 Csa-Chr3:30556186 2.22E-48 dispersed
Csa03g03387 Csa-Chr3:30556186 Csa05g00324 Csa-Chr5:2025742 1.49E-45 dispersed
Csa03g03387 Csa-Chr3:30556186 Csa03g03388 Csa-Chr3:30563653 5.76E-32 tandem
Csa03g03387 Csa-Chr3:30556186 Csa06g02658 Csa-Chr6:23400570 9.97E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31339 PF00847 AP2 8.90E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03387 - - csv:101203380 341.273