Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03404 ATGTACAAAGTGTGCTGGGTTGATGGGTGCAGTGACGTGGACTTGCTGGCCGGATTCGACCATGCAATCGCCGACGGAGTGGACATCATATCGGTGTCCATCGGCGGTGAGTCGACGGAATTCTTCAATGATCCGATCGCGATCGGATCATTTCACGCAATGGAGAAAGGAATATTGACTAGTTGCTCGGCGGGAAACAGCGGGCCGGAATTAAAGACGGTGGAGAACACGGCGCCGTGGATAATGACGGTGGCGGCTTCTACCATTGATAGGGATTTCAGTACCGTCGTGAAGTTGGGCAACAATAAGAAACTGTCTGGAGTATCAGTAAACACATTCACTCCAAAGAAGCAGATGTACCCTTTAATCTCCGGATCAAATGCTGCATTACCCAATCAATCCGATCCCTATCTTGATCCAAGTTGGTGTGATTCTGGGACTCTTGATGAGAAAAAAGTGAAAGGGAAAATAGTGTATTGTTTGGGATCAATGGACCAAGAATACACCATTTCTGAACTTGGAGGCAAAGGTGTAATTTCCAATCTTATGAACGTTTCTGAAACGGCTATTACCACTCCTATTCCATCCACTCATCTTTCCTCTACCAATTCTGATTATGTTGAAGCCTACATTAACTCCACCAAAAACCCTAAAGCTGTCATTTACAAAACTACTACAAGGAAGGTTGATGCTCCCTATTTGGCTTCCTTTTCTTCTAAAGGTCCTCAAACCATCGCTCTCAATATTCTTAAGCCGGACATTGCAGCACCGGGGGTGAACATATTAGCAGCATACTCAAATTTGGCTTCAATTACAAACAATAGACATTCCCTTTTCAATCTTCTTTCTGGTACTTCTATGGCTTGTCCTCATGCCGCCGCTGCGGCCGCCTATCTCAAAGCTTTTCACCCCACTTGGTCCCCCGCTGCCCTCAAGTCTGCCCTTATGACCACCGCGACGCCGTTGAAGATTGGAGATAAACTAGACGTGATTGGCGCTGGCACTGGCCAAATAAATCCGATCAAAGCGGTGCATCCAGGTCTCATTTACGACCTCACTCGCACCTCTTACCTCTCTTTCCTCTGCACCAACAAACGCTACTCCGACTCCGGCTCCGCCCTCGCCATCCTTACCGGAGACACCTCTTTAAACTGCTCCGACGTCCCGCGAGCCAGTGGCTTCGACGCCATCAACTACCCTTCCATGTACGTCCCCGTCGACCGAAACGCCACCTCTGTCTCCGCCGTCTTCCACCGGACCGTCACCCACGTCGGCTTCGGCCCATCGACGTACATAGCGAAGGTGAAATCGCCGGCAGGTTTGTCGGTGAAAGTCTCGCCGGATACTCTAAAATTTGATCGGGCGTACAAAAAACTGTCGTTTAAGGTGGTGGTGAAAGGGGCTGCGCCGGCGGTGGGGCAGGCACCGTTGACGGCTTCACTTGAATGGGATGATTCTAAGCATTATGTTAGGAGCCCAATTTTGGTGTTCAAGGTTTAA 1500 49.4 MYKVCWVDGCSDVDLLAGFDHAIADGVDIISVSIGGESTEFFNDPIAIGSFHAMEKGILTSCSAGNSGPELKTVENTAPWIMTVAASTIDRDFSTVVKLGNNKKLSGVSVNTFTPKKQMYPLISGSNAALPNQSDPYLDPSWCDSGTLDEKKVKGKIVYCLGSMDQEYTISELGGKGVISNLMNVSETAITTPIPSTHLSSTNSDYVEAYINSTKNPKAVIYKTTTRKVDAPYLASFSSKGPQTIALNILKPDIAAPGVNILAAYSNLASITNNRHSLFNLLSGTSMACPHAAAAAAYLKAFHPTWSPAALKSALMTTATPLKIGDKLDVIGAGTGQINPIKAVHPGLIYDLTRTSYLSFLCTNKRYSDSGSALAILTGDTSLNCSDVPRASGFDAINYPSMYVPVDRNATSVSAVFHRTVTHVGFGPSTYIAKVKSPAGLSVKVSPDTLKFDRAYKKLSFKVVVKGAAPAVGQAPLTASLEWDDSKHYVRSPILVFKV* 500
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 30713657 30719116 - CsaV3_3G037100.1 Csa03g03404 524309
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03404 499 PANTHER CUCUMISIN PROTEIN 1 499 - -
Csa03g03404 499 CDD PA_subtilisin_like 96 221 - -
Csa03g03404 499 ProSitePatterns Serine proteases, subtilase family, serine active site. 284 294 IPR023828 -
Csa03g03404 499 ProSiteProfiles Serine proteases, subtilase domain profile. 1 344 - -
Csa03g03404 499 SUPERFAMILY Subtilisin-like 1 348 IPR036852 GO:0004252|GO:0006508
Csa03g03404 499 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 499 IPR045051 -
Csa03g03404 499 Pfam Fibronectin type-III domain 397 496 IPR041469 -
Csa03g03404 499 Gene3D - 90 227 - -
Csa03g03404 499 Pfam Subtilase family 2 323 IPR000209 GO:0006508|GO:0008236
Csa03g03404 499 Gene3D Peptidase S8/S53 domain 1 357 IPR036852 GO:0004252|GO:0006508
Csa03g03404 499 Gene3D - 361 498 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03404 Csa-Chr3:30713657 Csa05g01060 Csa-Chr5:10608689 2.02E-150 dispersed
Csa03g03404 Csa-Chr3:30713657 Csa06g02669 Csa-Chr6:23476720 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03404 - - csv:101210386 974.541