Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa03g03444 | ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTAACTCTGGAGACTTCCATGGGTTCTTTCACTGTCGAGCTTTACTTCAAACACGCACCGAGAACATGTAGAAACTTCATCGAGCTTTCCCGGCGAGGTTATTATGACAATGTCAAATTCCACCGGATTATTAAGGATTTTATTGTGCAAGGTGGAGATCCCACAGGAACTGGACGGGGTGGGGAGTCTATTTATGGCAAGAAGTTTGAGGATGAAATAAAACCAGAGTTGAAGCATACTGGAGCTGGTATTCTATCTATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCTTTAGATGGAAAGCACTCCATCTTTGGAAGAGTTTGTAGGGGAATGGAAATTATCAAAAGGCTTGGCAGTGTACAAACTGATAACAATGATAGACCCATCCATGATGTGAAAATACTGCGGGCATCAGTTAAAGACTAA | 495 | 44.44 | MWASAEGGPPEVTLETSMGSFTVELYFKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD* | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 30954353 | 30957085 | - | CsaV3_3G037500.1 | Csa03g03444 | 524349 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa03g03444 | 164 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 1 | 5 | 163 | - | - | |
| Csa03g03444 | 164 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 15 | 162 | IPR002130 | GO:0000413|GO:0003755 | |
| Csa03g03444 | 164 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 5 | 163 | IPR044666 | - | |
| Csa03g03444 | 164 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 25 | 40 | IPR002130 | GO:0000413|GO:0003755 | |
| Csa03g03444 | 164 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 51 | 63 | IPR002130 | GO:0000413|GO:0003755 | |
| Csa03g03444 | 164 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 94 | 109 | IPR002130 | GO:0000413|GO:0003755 | |
| Csa03g03444 | 164 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 109 | 121 | IPR002130 | GO:0000413|GO:0003755 | |
| Csa03g03444 | 164 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 122 | 137 | IPR002130 | GO:0000413|GO:0003755 | |
| Csa03g03444 | 164 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 46 | 63 | IPR020892 | GO:0003755|GO:0006457 | |
| Csa03g03444 | 164 | PIRSF | Peptidylpro_ismrse | 3 | 164 | IPR024936 | GO:0003755 | |
| Csa03g03444 | 164 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 12 | 161 | IPR002130 | GO:0000413|GO:0003755 | |
| Csa03g03444 | 164 | Gene3D | - | 3 | 164 | IPR029000 | - | |
| Csa03g03444 | 164 | SUPERFAMILY | Cyclophilin-like | 11 | 162 | IPR029000 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g01454 | Csa-Chr1:10176111 | Csa03g03444 | Csa-Chr3:30954353 | 1.22E-51 | dispersed | |
| Csa02g00843 | Csa-Chr2:7705936 | Csa03g03444 | Csa-Chr3:30954353 | 1.17E-13 | dispersed | |
| Csa03g01066 | Csa-Chr3:8488994 | Csa03g03444 | Csa-Chr3:30954353 | 4.67E-06 | dispersed | |
| Csa03g03444 | Csa-Chr3:30954353 | Csa06g03023 | Csa-Chr6:26036788 | 2.11E-50 | dispersed | |
| Csa03g03931 | Csa-Chr3:34426186 | Csa03g03444 | Csa-Chr3:30954353 | 9.80E-06 | dispersed | |
| Csa03g03444 | Csa-Chr3:30954353 | Csa02g01199 | Csa-Chr2:11781859 | 1.46E-38 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa03g03444 | K12733 | - | csv:101222111 | 335.88 |