Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03451 ATGTCCATAAACAACTTTTCTCCTGACTTCCATCAACCACCTCTTTTCTCTACTTCCCAACTTCCCATCATGCTCAACTCCAAATCCTCTCTCTCCGTCGCCCCCGCCGACCACCTTCCCATGTTCGAGAAACCCTTGACCCCCAGCGACGTTGGCAAACTCAACCGTCTCGTCATCCCCAAGCAATACGCAGAAAAATACTTTCCCCTCTCTCCCTCCGCCGCAGTCGCCACCGCCGCCGCTGCCGCTGCCGCCGGTGACTCTGCGGATAAGGGGTTGCTCCTCAGCTTTGAAGATGAGTCCGGAAAAATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTGACCAAAGGGTGGAGCCGGTTTGTTAAAGAGAAGAGGCTCGATGCCGGTGATGTCGTCGTTTTTGAACGCCACCGCCGTGACGGTGATAGGTTGTTCATTGGGTGGAAAAAGAGGTCGGCACCGTCTCCAACGGACAGTGCGGTGGCTACGGGGAGTGGTGGGGTTGGCGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTGCAAATTCATATCCTAATTCTCATCGTCATCTTCCTTCACCGCCATACCAGTCTTCTTCCGATACTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGATTGGGAATTCAAAGATACTGCGGCTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCTGAACCACCGTCGTTGCTCAATATCGGGTCAAGTTTAACTTTATCGGGTCGAGATCCAACCCGCCACACCTTCTACCCACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAACCAGACGAAATATCAAGGATAG 891 51.74 MSINNFSPDFHQPPLFSTSQLPIMLNSKSSLSVAPADHLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVATAAAAAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKKRSAPSPTDSAVATGSGGVGGGGGWTRMFCSANSYPNSHRHLPSPPYQSSSDTPHAESSVQSQTVSIGNSKILRLFGVDLECQTDMSEPEPPSLLNIGSSLTLSGRDPTRHTFYPHYSSPLPHHMDFTFSQDVNQTKYQG* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30990269 30994595 - CsaV3_3G037570.1 Csa03g03451 524356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03451 296 SUPERFAMILY DNA-binding pseudobarrel domain 38 158 IPR015300 -
Csa03g03451 296 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 260 IPR044800 GO:0003700
Csa03g03451 296 Gene3D - 35 168 IPR015300 -
Csa03g03451 296 PANTHER - 28 260 - -
Csa03g03451 296 SMART B3_2 42 159 IPR003340 GO:0003677
Csa03g03451 296 Pfam B3 DNA binding domain 42 158 IPR003340 GO:0003677
Csa03g03451 296 ProSiteProfiles B3 DNA-binding domain profile. 42 159 IPR003340 GO:0003677
Csa03g03451 296 MobiDBLite consensus disorder prediction 195 220 - -
Csa03g03451 296 CDD B3_DNA 40 148 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03451 Csa-Chr3:30990269 Csa06g00841 Csa-Chr6:6759884 1.86E-48 dispersed
Csa03g03451 Csa-Chr3:30990269 Csa04g00592 Csa-Chr4:3908314 6.09E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31344 PF02362 B3 6.80E-30 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03451 - - csv:101214938 582.408