Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03494 ATGGCGACTTACCTTCATGGCAATTCTGATCAATTCCAATCCTCTGATGGCGGCCTTCAAACCCTTGTCTTAATGAATCCAACCTATGTTCAATTCTCCGATACCACTCCTCCTCCTCCTCCTCCTCCTTCCCACCCTAATCTCCTCTTCTTCAATTCTCCTTCTTCCACTGCTAATACCTTCACTACACTCGTACAACCCCCTCCTTCGTCTCATACCCAACAGTTTGTTGGAATTCCACTACAGACCACATCCGCCGCTTCCCCTACTTCTCAAGACCATAATTCGCATCCTTTGAATCCTCACCATGACATCTCTCCCTTGCACGGCTTTGTTCCTCGCCTTCAGCATAATATTTGGAACCAAATTGATCCTTCCACGGCCGCGCGTGACTCTGCACGTGCTCAGCAGGGCTTGTCTTTGACCCTTTCTTCACAACATCAGCAAGCCTTTGGGTCCAGAGATGTTCAGTCGCAGAACCAACAAGCGCTTTCTGGTGAGGATAACATGCGAATCTCCGGGGGATCCAGTTCTTCGGCTTCCGGTGTGACCAATGGTGTGGCTGGAATTCAGGGTGTTTTGATTAGCTCCAAATATCTTAAGGCTACGCAAGAACTTCTAGATGAAGTTGTTAATGTCACCCAAAATGGAATTAAAAGTGAATCATCTCCAAAGAAAGCTACTGGAAATCAATCCAAAATGATCGGAGATGCAGCCGCTGCAACCGGAACTGCAGATGGTTCTTTAGAAGGTGAAGCCGACGGTAAACAAGCCGCCGAGCTTACAACCTCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGCATGCTTGAGGAGGTGGAACAAAGATACCGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCCGCTGGAGCCGGTTCGGCAAGAACCTACACCGCGCTTGCACTTCAGACGATTTCGAAGCAATTCCGCTGCTTAAAAGACGCAATTACCGGCCAAATCAGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAGTGGAAGGTTCACGGTTGAAATTCGTCGACCACCATCTCCGGCAACAACGAGCTCTTCAACAATTGGGTATGATCCAACACAATGCTTGGAGACCCCAGAGAGGCTTACCCGAAAGATCTGTTTCGATTCTTCGAGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCTAAGGATTCCGATAAACACATGCTTGCTAAGCAAACGGGGCTCACAAGAAGTCAGGTTTCCAATTGGTTCATAAACGCGAGAGTTCGACTATGGAAGCCAATGGTGGAAGAGATGTACATGGAAGAAATCAAAGACCAAGAACAGAACGGCAACGGATCGACACCGACAACAGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCGGAAACAAAGAGCCCAAATTCAAAACAAGAAAACTCTCCAAACCAAAACGTTCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGTAACTCATCTGGATTTACACTCATCGGAACCTCATCGGAACTCGACGGAATCACACAAGGAAGCCCGAAAAAACAGAGAGGCCCAGACATCCTTCATTCCTCAAACAACAACGTGCCTTTCATAAACATGGACATCAAACCTCGAGAAGAAGAAGAACATCAAAATCAAAATCACAATCCCCATCAAAACAATCATCATCATCATCATCATCTTCTTCCAATGAAATTCGATGAAGATAGACAAAACAGAGATGGGTATTCATTTTTAGGCCAACCCCATTTCAACATCGGCGGATTTGGCCAATACCCAATTGGAGAAATCGCCAGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGTAACAATGGCGTATCGTTAACTCTAGGCCTTCCCCATTGCGAAAATCTCTCGTTAAACCCAGCTACCCACCAAAGCTTCCTCCCAAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAGCCCACTGATTTTTCAGCCATTAACGCTTCTACTGCTCATTCTTCCACTGCTTTTGAGACCATCAACATTCAAAATGGAAAAAGGTTTGCTGCTCAATTACTACCAGATTTTGTGGCCTAA 2151 45.93 MATYLHGNSDQFQSSDGGLQTLVLMNPTYVQFSDTTPPPPPPPSHPNLLFFNSPSSTANTFTTLVQPPPSSHTQQFVGIPLQTTSAASPTSQDHNSHPLNPHHDISPLHGFVPRLQHNIWNQIDPSTAARDSARAQQGLSLTLSSQHQQAFGSRDVQSQNQQALSGEDNMRISGGSSSSASGVTNGVAGIQGVLISSKYLKATQELLDEVVNVTQNGIKSESSPKKATGNQSKMIGDAAAATGTADGSLEGEADGKQAAELTTSERQEIQMKKAKLISMLEEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKVEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKDQEQNGNGSTPTTEKSNDDSVSKSIAPPPETKSPNSKQENSPNQNVHPSISISNSSGGNVRNSSGFTLIGTSSELDGITQGSPKKQRGPDILHSSNNNVPFINMDIKPREEEEHQNQNHNPHQNNHHHHHHLLPMKFDEDRQNRDGYSFLGQPHFNIGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNPATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA* 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31283814 31288025 + CsaV3_3G038000.1 Csa03g03494 524399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03494 716 MobiDBLite consensus disorder prediction 455 533 - -
Csa03g03494 716 MobiDBLite consensus disorder prediction 454 583 - -
Csa03g03494 716 MobiDBLite consensus disorder prediction 240 265 - -
Csa03g03494 716 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 669 - -
Csa03g03494 716 MobiDBLite consensus disorder prediction 558 573 - -
Csa03g03494 716 MobiDBLite consensus disorder prediction 84 108 - -
Csa03g03494 716 Gene3D - 378 456 - -
Csa03g03494 716 Pfam Associated with HOX 193 333 IPR006563 -
Csa03g03494 716 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Csa03g03494 716 MobiDBLite consensus disorder prediction 126 183 - -
Csa03g03494 716 Coils Coil 266 293 - -
Csa03g03494 716 CDD homeodomain 382 443 IPR001356 GO:0003677
Csa03g03494 716 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Csa03g03494 716 SMART HOX_1 382 446 IPR001356 GO:0003677
Csa03g03494 716 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Csa03g03494 716 SMART prehox3 188 334 IPR006563 -
Csa03g03494 716 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 10 669 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03494 Csa-Chr3:31283814 Csa04g01545 Csa-Chr4:15002380 1.03E-58 dispersed
Csa01g01369 Csa-Chr1:9067362 Csa03g03494 Csa-Chr3:31283814 6.70E-70 transposed
Csa02g01292 Csa-Chr2:12571370 Csa03g03494 Csa-Chr3:31283814 5.10E-105 transposed
Csa02g01490 Csa-Chr2:14284494 Csa03g03494 Csa-Chr3:31283814 1.02E-83 transposed
Csa02g01843 Csa-Chr2:17613594 Csa03g03494 Csa-Chr3:31283814 1.07E-49 transposed
Csa05g00256 Csa-Chr5:1549371 Csa03g03494 Csa-Chr3:31283814 2.96E-85 transposed
Csa07g02163 Csa-Chr7:20537174 Csa03g03494 Csa-Chr3:31283814 1.12E-83 transposed
Csa03g03494 Csa-Chr3:31283814 Csa06g02470 Csa-Chr6:21978294 8.73E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31347 PF07526 POX 8.70E-49 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03494 - - csv:101208201 1335.86