Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03495 | ATGGATGAACAAATCGAAGTCCCCCACTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTTCCCTCCGGCATCACCTACGATCGCCACTCCATTGAAACTTGGCTCTTCTCCGGCAAAAACTCCTCCTGCCCCGTCACTAAACTCCCAGTCTCCGACTCCGATTCCGATCTCCTCACCCCCAACCACACCCTCCGCCGTCTCATCCAAGCTTGGTGTACTTTGAACTCCTCCCATGGCGTCGAACGTTTCCCCACTCCTAAACCCCCCATTCATAAATCCCAAATCCTTCACATTATTTCCACTTCCAACACTTCCCCTTCTTCCCAAATCTCCTCCATTCGCCGTCTCCGCTCCATTTCCGCCGAGTCTGAAACTAATCGCCGATGCGTTGAATTCGCCGGTGCGCCGGAGTTTTTAGTCTCTGTTATTGTGGGTTCTGATTCCTCGGCTTCTCATGAAGCCCTCTCCACTCTTCATAACCTCCGTCTCTCTGATTCAACGTTTAAATCATTGGCTACCCGCCCTGAATTCCTCGAGTCCTTGACCGATTTCATGAAATTACAACAGGGTACTCATGAATCGTCCAGAACGTACGCGGTGTTGATTTTGAAATCAATTATTGAAGTCGCTGAACCAATTCAACTAAGCTTCTTGAAACCCGAATTGTTTGTGCAAATCGTTGAGATTTTGAAAGATCGATCATCCTCTCAACAGATTTTCAAAGCGGCATTGGGTATTTTGATTGCGGTGAGTCCATTGGGGAGAAACAGACTGAAGGCAGTAGAAGCAGGTGGAGTTAGGGCTTTGGTTGAGATTTTACTGTCGTCGCCGGAAAAAAGAGTATGTGAAATGACATTGACGGCGATGGATATACTGTGTGGGTGTGCGGATGGAAGAGCGGCGCTGTTGGCACACGGCGGAGGGATGGCAGTGGTTTCGAAGAAGATATTGAGAGTGTCGCAATTGGGGAGTGAAAGGGCGGTGAGAATATTGTATTCGGTGGCTAAATTCTCAGGAAGTCCTGCGGTGTTGATGGAAATGGCGCAACTGGGGATTGTGGCAAAGCTATGTTTGGTTCTGCAAATTGAAAATGGAGGCAAGACGAAGGAGAAAGCTAAAGAGATTTTGAAAATGCATTCTCGTCTTTGGAAGAACTCACCTTGTATTCCTTCTAAATTGGCTTCTTCATATCCTACAAATTAA | 1221 | 47.42 | MDEQIEVPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSGKNSSCPVTKLPVSDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHIISTSNTSPSSQISSIRRLRSISAESETNRRCVEFAGAPEFLVSVIVGSDSSASHEALSTLHNLRLSDSTFKSLATRPEFLESLTDFMKLQQGTHESSRTYAVLILKSIIEVAEPIQLSFLKPELFVQIVEILKDRSSSQQIFKAALGILIAVSPLGRNRLKAVEAGGVRALVEILLSSPEKRVCEMTLTAMDILCGCADGRAALLAHGGGMAVVSKKILRVSQLGSERAVRILYSVAKFSGSPAVLMEMAQLGIVAKLCLVLQIENGGKTKEKAKEILKMHSRLWKNSPCIPSKLASSYPTN* | 407 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 31295374 | 31296949 | + | CsaV3_3G038010.1 | Csa03g03495 | 524400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03495 | 406 | CDD | RING-Ubox_PUB | 11 | 53 | IPR045210 | - | |
Csa03g03495 | 406 | Gene3D | - | 94 | 390 | IPR011989 | - | |
Csa03g03495 | 406 | ProSiteProfiles | U-box domain profile. | 6 | 84 | IPR003613 | GO:0004842|GO:0016567 | |
Csa03g03495 | 406 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PUB23 | 3 | 404 | - | - | |
Csa03g03495 | 406 | Pfam | U-box domain | 7 | 81 | IPR003613 | GO:0004842|GO:0016567 | |
Csa03g03495 | 406 | PANTHER | WDSAM1 PROTEIN | 3 | 404 | IPR045185 | GO:0061630 | |
Csa03g03495 | 406 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 88 | IPR013083 | - | |
Csa03g03495 | 406 | SUPERFAMILY | RING/U-box | 4 | 85 | - | - | |
Csa03g03495 | 406 | SMART | Ubox_2 | 10 | 77 | IPR003613 | GO:0004842|GO:0016567 | |
Csa03g03495 | 406 | SUPERFAMILY | ARM repeat | 102 | 372 | IPR016024 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03270 | Csa-Chr1:29011462 | Csa03g03495 | Csa-Chr3:31295374 | 9.33E-103 | dispersed | |
Csa03g03495 | Csa-Chr3:31295374 | Csa05g01122 | Csa-Chr5:11451621 | 3.33E-56 | dispersed | |
Csa03g01844 | Csa-Chr3:14148559 | Csa03g03495 | Csa-Chr3:31295374 | 2.55E-60 | transposed | |
Csa03g02112 | Csa-Chr3:17706762 | Csa03g03495 | Csa-Chr3:31295374 | 4.19E-59 | transposed | |
Csa04g01150 | Csa-Chr4:9818244 | Csa03g03495 | Csa-Chr3:31295374 | 4.93E-149 | transposed | |
Csa03g03495 | Csa-Chr3:31295374 | Csa06g02471 | Csa-Chr6:21988228 | 4.13E-140 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03495 | - | - | csv:101208445 | 758.829 |