Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03495 ATGGATGAACAAATCGAAGTCCCCCACTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTTCCCTCCGGCATCACCTACGATCGCCACTCCATTGAAACTTGGCTCTTCTCCGGCAAAAACTCCTCCTGCCCCGTCACTAAACTCCCAGTCTCCGACTCCGATTCCGATCTCCTCACCCCCAACCACACCCTCCGCCGTCTCATCCAAGCTTGGTGTACTTTGAACTCCTCCCATGGCGTCGAACGTTTCCCCACTCCTAAACCCCCCATTCATAAATCCCAAATCCTTCACATTATTTCCACTTCCAACACTTCCCCTTCTTCCCAAATCTCCTCCATTCGCCGTCTCCGCTCCATTTCCGCCGAGTCTGAAACTAATCGCCGATGCGTTGAATTCGCCGGTGCGCCGGAGTTTTTAGTCTCTGTTATTGTGGGTTCTGATTCCTCGGCTTCTCATGAAGCCCTCTCCACTCTTCATAACCTCCGTCTCTCTGATTCAACGTTTAAATCATTGGCTACCCGCCCTGAATTCCTCGAGTCCTTGACCGATTTCATGAAATTACAACAGGGTACTCATGAATCGTCCAGAACGTACGCGGTGTTGATTTTGAAATCAATTATTGAAGTCGCTGAACCAATTCAACTAAGCTTCTTGAAACCCGAATTGTTTGTGCAAATCGTTGAGATTTTGAAAGATCGATCATCCTCTCAACAGATTTTCAAAGCGGCATTGGGTATTTTGATTGCGGTGAGTCCATTGGGGAGAAACAGACTGAAGGCAGTAGAAGCAGGTGGAGTTAGGGCTTTGGTTGAGATTTTACTGTCGTCGCCGGAAAAAAGAGTATGTGAAATGACATTGACGGCGATGGATATACTGTGTGGGTGTGCGGATGGAAGAGCGGCGCTGTTGGCACACGGCGGAGGGATGGCAGTGGTTTCGAAGAAGATATTGAGAGTGTCGCAATTGGGGAGTGAAAGGGCGGTGAGAATATTGTATTCGGTGGCTAAATTCTCAGGAAGTCCTGCGGTGTTGATGGAAATGGCGCAACTGGGGATTGTGGCAAAGCTATGTTTGGTTCTGCAAATTGAAAATGGAGGCAAGACGAAGGAGAAAGCTAAAGAGATTTTGAAAATGCATTCTCGTCTTTGGAAGAACTCACCTTGTATTCCTTCTAAATTGGCTTCTTCATATCCTACAAATTAA 1221 47.42 MDEQIEVPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSGKNSSCPVTKLPVSDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHIISTSNTSPSSQISSIRRLRSISAESETNRRCVEFAGAPEFLVSVIVGSDSSASHEALSTLHNLRLSDSTFKSLATRPEFLESLTDFMKLQQGTHESSRTYAVLILKSIIEVAEPIQLSFLKPELFVQIVEILKDRSSSQQIFKAALGILIAVSPLGRNRLKAVEAGGVRALVEILLSSPEKRVCEMTLTAMDILCGCADGRAALLAHGGGMAVVSKKILRVSQLGSERAVRILYSVAKFSGSPAVLMEMAQLGIVAKLCLVLQIENGGKTKEKAKEILKMHSRLWKNSPCIPSKLASSYPTN* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31295374 31296949 + CsaV3_3G038010.1 Csa03g03495 524400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03495 406 CDD RING-Ubox_PUB 11 53 IPR045210 -
Csa03g03495 406 Gene3D - 94 390 IPR011989 -
Csa03g03495 406 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Csa03g03495 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 404 - -
Csa03g03495 406 Pfam U-box domain 7 81 IPR003613 GO:0004842|GO:0016567
Csa03g03495 406 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Csa03g03495 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Csa03g03495 406 SUPERFAMILY RING/U-box 4 85 - -
Csa03g03495 406 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Csa03g03495 406 SUPERFAMILY ARM repeat 102 372 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03270 Csa-Chr1:29011462 Csa03g03495 Csa-Chr3:31295374 9.33E-103 dispersed
Csa03g03495 Csa-Chr3:31295374 Csa05g01122 Csa-Chr5:11451621 3.33E-56 dispersed
Csa03g01844 Csa-Chr3:14148559 Csa03g03495 Csa-Chr3:31295374 2.55E-60 transposed
Csa03g02112 Csa-Chr3:17706762 Csa03g03495 Csa-Chr3:31295374 4.19E-59 transposed
Csa04g01150 Csa-Chr4:9818244 Csa03g03495 Csa-Chr3:31295374 4.93E-149 transposed
Csa03g03495 Csa-Chr3:31295374 Csa06g02471 Csa-Chr6:21988228 4.13E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03495 - - csv:101208445 758.829