Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03501 ATGAACGATTTATTCTCCTCTCGCTCCTTTTCCCGCGACGCCCATGTCGTTGAAATGGGCAACAACGCCTCCTCTTCCCCCACTGCTGTTAATCTCGATAAGTTCTTTGAAGACGTTGAGTCTGTTAAAGACGAGCTCAAGGAGCTTGAACGACTTTACTCCAACCTTCATGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCTGTCAAGGACCTCCGATCTCGCATGGATACTGATGTTTCCCTTGCTCTTAAGAAGGCTAAACTCATTAAGGTTCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGCCTCCCTGGTTGTGGTCCTGGTTCCTCTTCTGATCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGATTCTATGGAGAGTTTTAACAATCTTAGGCAACAGATCTCCTCTGAGTACAGGGAGACCGTTCAGCGAAGATATTACACTGTTACTGGTGAAAATCCGGACGAGAAAACCATTGATGTCTTGATATCTACAGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCATGGACATGGCAGTTTTAGTGCACGAACAAGGCGAGAAACTCGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGTGGCACACAGGAGTTGACAACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTTTGCTACTCGTTGTCTTGGTGATTGTCCTCAGCCTGCAGCCTTGGAAGAAAAATAACAGTAGTTCACCCGCAACACCCTAA 924 46.75 MNDLFSSRSFSRDAHVVEMGNNASSSPTAVNLDKFFEDVESVKDELKELERLYSNLHDSHEQSKTLHNAKAVKDLRSRMDTDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIILLLVVLVIVLSLQPWKKNNSSSPATP* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31360235 31362640 + CsaV3_3G038070.1 Csa03g03501 524406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03501 307 Pfam SNARE domain 238 290 IPR000727 -
Csa03g03501 307 Coils Coil 32 59 - -
Csa03g03501 307 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Csa03g03501 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Csa03g03501 307 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Csa03g03501 307 Gene3D - 30 162 - -
Csa03g03501 307 CDD SynN 32 189 IPR006011 GO:0016020
Csa03g03501 307 SMART tSNARE_6 197 264 IPR000727 -
Csa03g03501 307 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 295 - -
Csa03g03501 307 SUPERFAMILY t-snare proteins 31 257 IPR010989 GO:0016020|GO:0016192
Csa03g03501 307 Coils Coil 205 225 - -
Csa03g03501 307 PANTHER SYNTAXIN 9 295 IPR045242 -
Csa03g03501 307 Coils Coil 127 151 - -
Csa03g03501 307 CDD SNARE_syntaxin1-like 201 263 - -
Csa03g03501 307 Gene3D - 198 294 - -
Csa03g03501 307 SMART SynN_4 27 153 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03501 Csa-Chr3:31360235 Csa06g02729 Csa-Chr6:23857036 1.62E-146 dispersed
Csa01g01182 Csa-Chr1:7322149 Csa03g03501 Csa-Chr3:31360235 5.05E-123 transposed
Csa03g00149 Csa-Chr3:1148834 Csa03g03501 Csa-Chr3:31360235 1.77E-09 transposed
Csa04g01137 Csa-Chr4:9688071 Csa03g03501 Csa-Chr3:31360235 3.89E-78 transposed
Csa06g03248 Csa-Chr6:27399246 Csa03g03501 Csa-Chr3:31360235 5.31E-60 transposed
Csa03g03501 Csa-Chr3:31360235 Csa06g02728 Csa-Chr6:23853120 4.57E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03501 K08486 - csv:101208931 579.326