Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03507 ATGAACTCCTCCCCAGACTCCGGCGGCGGCGATATCGGTGGTTTCCCATACATCCTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCACTACCTATTTATGTACCAGAACTACCGTTCCGCCGCCGAATCGCCGTCTCCCGCAGGGGGGACGGCGGGATTTCGTCGTGGATTTTGTACAGGGGCTAGAAGATGAGGTTATTAATGGATATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAAAGGAAATTGGAGTCCGCCGCCACGAATGGTTGTTCGATTTGTTTGGTGGATTATAAAGACGACGACGTTTTGCGGTTGTTGCCAGACTGTGGCCATCTGTTTCACTGTGGTTGTATTGATCCGTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCAGTGCCGACGCCGATCTCCACCCCTTTGGCGGAGGTGATTCCGTTGGCCGTCGGAAGAAACTCCGACGAAGAAGGGATTTTTCTCACTCACCAATGGCAATCGAATCTTTCTGTTCCTCCCATTCTACTCTACCCAACCCCCCACCTCAAAAAAGAGCATTTCCATGGAACCCATTTTTCAGATGAAGCTGATTTTCCCATTTCTTCTTTGCTTCATTTTGTAGCACTTCTTACACCCTTCAATTTATCACATCTCAATGAGACCGCTAAGTATGATATCACGGTGAAAGGAGTAGAGATATCTCCCAACCCCGTAGTTAGAGGTCATCCAACAAATATGATCTTCAATCTAATTATAGGTAAGCCAATCATTGCAGGAAAAATGGTAGTTGATATTTCATATTTCGGATGGCACATATATAGTGACAGCCATGACATTTGTGTTGAGACGTCCTGCCCTTACTTGTCTGGTGATTTTGCACTCCCTCCACTGCGAACACCTCTGGCGTTCTTTTTACCTGGTTCGTATCATATGCAGATAACCATTGTTGATGGAGATGATAATAAACTTACATGCTTTGGCTTTGATTATGAATTGGTGATTGCATCACTATTTGGAGATAGCTAA 1053 46.06 MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLFHCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGRNSDEEGIFLTHQWQSNLSVPPILLYPTPHLKKEHFHGTHFSDEADFPISSLLHFVALLTPFNLSHLNETAKYDITVKGVEISPNPVVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYLSGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNKLTCFGFDYELVIASLFGDS* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31398323 31403370 + CsaV3_3G038130.1 Csa03g03507 524412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03507 350 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Csa03g03507 350 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 10 160 - -
Csa03g03507 350 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 160 IPR045899 -
Csa03g03507 350 SMART pgtp_13 233 339 IPR003172 -
Csa03g03507 350 SMART ring_2 97 138 IPR001841 -
Csa03g03507 350 Pfam ML domain 234 340 IPR003172 -
Csa03g03507 350 SUPERFAMILY RING/U-box 72 144 - -
Csa03g03507 350 Pfam Ring finger domain 97 139 IPR001841 -
Csa03g03507 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 143 IPR013083 -
Csa03g03507 350 Gene3D - 226 344 - -
Csa03g03507 350 CDD RING-H2_PA-TM-RING 97 139 - -
Csa03g03507 350 SUPERFAMILY E set domains 232 341 IPR014756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00856 Csa-Chr3:7210003 Csa03g03507 Csa-Chr3:31398323 4.73E-27 dispersed
Csa03g03507 Csa-Chr3:31398323 Csa04g00658 Csa-Chr4:4416124 1.73E-19 dispersed
Csa01g03284 Csa-Chr1:29151844 Csa03g03507 Csa-Chr3:31398323 8.68E-24 transposed
Csa03g03507 Csa-Chr3:31398323 Csa06g02730 Csa-Chr6:23860220 1.02E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03507 - - csv:101210162 258.07