Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03507 | ATGAACTCCTCCCCAGACTCCGGCGGCGGCGATATCGGTGGTTTCCCATACATCCTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCACTACCTATTTATGTACCAGAACTACCGTTCCGCCGCCGAATCGCCGTCTCCCGCAGGGGGGACGGCGGGATTTCGTCGTGGATTTTGTACAGGGGCTAGAAGATGAGGTTATTAATGGATATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAAAGGAAATTGGAGTCCGCCGCCACGAATGGTTGTTCGATTTGTTTGGTGGATTATAAAGACGACGACGTTTTGCGGTTGTTGCCAGACTGTGGCCATCTGTTTCACTGTGGTTGTATTGATCCGTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCAGTGCCGACGCCGATCTCCACCCCTTTGGCGGAGGTGATTCCGTTGGCCGTCGGAAGAAACTCCGACGAAGAAGGGATTTTTCTCACTCACCAATGGCAATCGAATCTTTCTGTTCCTCCCATTCTACTCTACCCAACCCCCCACCTCAAAAAAGAGCATTTCCATGGAACCCATTTTTCAGATGAAGCTGATTTTCCCATTTCTTCTTTGCTTCATTTTGTAGCACTTCTTACACCCTTCAATTTATCACATCTCAATGAGACCGCTAAGTATGATATCACGGTGAAAGGAGTAGAGATATCTCCCAACCCCGTAGTTAGAGGTCATCCAACAAATATGATCTTCAATCTAATTATAGGTAAGCCAATCATTGCAGGAAAAATGGTAGTTGATATTTCATATTTCGGATGGCACATATATAGTGACAGCCATGACATTTGTGTTGAGACGTCCTGCCCTTACTTGTCTGGTGATTTTGCACTCCCTCCACTGCGAACACCTCTGGCGTTCTTTTTACCTGGTTCGTATCATATGCAGATAACCATTGTTGATGGAGATGATAATAAACTTACATGCTTTGGCTTTGATTATGAATTGGTGATTGCATCACTATTTGGAGATAGCTAA | 1053 | 46.06 | MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLFHCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGRNSDEEGIFLTHQWQSNLSVPPILLYPTPHLKKEHFHGTHFSDEADFPISSLLHFVALLTPFNLSHLNETAKYDITVKGVEISPNPVVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYLSGDFALPPLRTPLAFFLPGSYHMQITIVDGDDNKLTCFGFDYELVIASLFGDS* | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 31398323 | 31403370 | + | CsaV3_3G038130.1 | Csa03g03507 | 524412 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03507 | 350 | ProSiteProfiles | Zinc finger RING-type profile. | 97 | 139 | IPR001841 | - | |
Csa03g03507 | 350 | PANTHER | RING-H2 FINGER PROTEIN ATL71-RELATED | 10 | 160 | - | - | |
Csa03g03507 | 350 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 10 | 160 | IPR045899 | - | |
Csa03g03507 | 350 | SMART | pgtp_13 | 233 | 339 | IPR003172 | - | |
Csa03g03507 | 350 | SMART | ring_2 | 97 | 138 | IPR001841 | - | |
Csa03g03507 | 350 | Pfam | ML domain | 234 | 340 | IPR003172 | - | |
Csa03g03507 | 350 | SUPERFAMILY | RING/U-box | 72 | 144 | - | - | |
Csa03g03507 | 350 | Pfam | Ring finger domain | 97 | 139 | IPR001841 | - | |
Csa03g03507 | 350 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 143 | IPR013083 | - | |
Csa03g03507 | 350 | Gene3D | - | 226 | 344 | - | - | |
Csa03g03507 | 350 | CDD | RING-H2_PA-TM-RING | 97 | 139 | - | - | |
Csa03g03507 | 350 | SUPERFAMILY | E set domains | 232 | 341 | IPR014756 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00856 | Csa-Chr3:7210003 | Csa03g03507 | Csa-Chr3:31398323 | 4.73E-27 | dispersed | |
Csa03g03507 | Csa-Chr3:31398323 | Csa04g00658 | Csa-Chr4:4416124 | 1.73E-19 | dispersed | |
Csa01g03284 | Csa-Chr1:29151844 | Csa03g03507 | Csa-Chr3:31398323 | 8.68E-24 | transposed | |
Csa03g03507 | Csa-Chr3:31398323 | Csa06g02730 | Csa-Chr6:23860220 | 1.02E-51 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03507 | - | - | csv:101210162 | 258.07 |