Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03564 ATGGTGGAGTTGGGTTTGAGCCTTGGTGATCATCCATCTTCCAATTCCAATAGTAATAATAAGAAGAAGCCATTTTCTAATTTTCTGTCTAAACCAATTTCTTCTTCTTCTAATTCTTCTTCCTCTCTTATGGCTTTGGGGTTTTGTGTTGGTTTAATCGGACGTCATTCTGCTTCTGCTTCTGCTTCTGCTTCGGTTCAAGATGATGAAGAAGATGAAGAACAAGATGATGAGGATGATGATGATGATCGGAAAACGGTCGTTCTTGCTGGTTCAACTTCCGGTTTGGATCCACCGGTTCAGCTTGATCTTCTTCCCTTGGCTCCTGTTCCACGTTCTTCTTCTTCTTCTTCTCCCCTCCTTCCTTTTCCATGGCTTTCTCATCACTTGATGGGGGAAGTGGGGGGGAGTTCAGAGGGAGGAGAAAGGGTAGAGACAGTGGATGTGAAGAGGGTGGTGGTGGAGGAGAGAGAAGATAGGGTGGCGGCGGTGGCAGTGGCGGCGTTGTCGTCTCCGAACAGTACGGTGTCATGTTTTGAAATGGAATTTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATTAGAAGGAAGAGATCATGGGATCATATGGAAATGGAAACAGAAAGAGGAGGAGGAGGAGGAGGTTGTTCAAGAATAATGAGTGATGATGAAGATAACAATGCTTCTGCTTCTGCTGCTGCTCGTAAAAAGCTTCGACTTTCTAAACTACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACTCTTAATCCTAAGCAGAAGCTAGCACTAGCAAAGCAGCTAAACCTCCGACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACGAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGAAGATGCTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCTTTTTATATGCAACTTCCAGCCACTACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCTACCACCACCACCACCACCCCCGCACCCACCACCCCCGCCCCGTCCTCCGCTCTTTGTCTCGCTAACAAACCCAAGATCTTGCCATTTCCTCACTTGCATCAGGCTGCTTCATGA 1161 46.25 MVELGLSLGDHPSSNSNSNNKKKPFSNFLSKPISSSSNSSSSLMALGFCVGLIGRHSASASASASVQDDEEDEEQDDEDDDDDRKTVVLAGSTSGLDPPVQLDLLPLAPVPRSSSSSSPLLPFPWLSHHLMGEVGGSSEGGERVETVDVKRVVVEEREDRVAAVAVAALSSPNSTVSCFEMEFGGGGGGGGGGIRRKRSWDHMEMETERGGGGGGCSRIMSDDEDNNASASAAARKKLRLSKLQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTTTTTPAPTTPAPSSALCLANKPKILPFPHLHQAAS* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31859666 31862178 - CsaV3_3G038700.1 Csa03g03564 524469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03564 386 SUPERFAMILY Homeodomain-like 220 292 IPR009057 -
Csa03g03564 386 MobiDBLite consensus disorder prediction 59 84 - -
Csa03g03564 386 MobiDBLite consensus disorder prediction 66 83 - -
Csa03g03564 386 Gene3D - 239 289 - -
Csa03g03564 386 MobiDBLite consensus disorder prediction 9 41 - -
Csa03g03564 386 Pfam Homeobox associated leucine zipper 291 325 IPR003106 GO:0006355|GO:0043565
Csa03g03564 386 ProSiteProfiles 'Homeobox' domain profile. 231 291 IPR001356 GO:0003677
Csa03g03564 386 SMART halz 291 334 IPR003106 GO:0006355|GO:0043565
Csa03g03564 386 PANTHER - 67 372 - -
Csa03g03564 386 MobiDBLite consensus disorder prediction 1 41 - -
Csa03g03564 386 Coils Coil 297 327 - -
Csa03g03564 386 SMART HOX_1 233 295 IPR001356 GO:0003677
Csa03g03564 386 CDD homeodomain 235 292 IPR001356 GO:0003677
Csa03g03564 386 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 67 372 - -
Csa03g03564 386 Pfam Homeodomain 235 289 IPR001356 GO:0003677
Csa03g03564 386 ProSitePatterns 'Homeobox' domain signature. 266 289 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00756 Csa-Chr3:6687287 Csa03g03564 Csa-Chr3:31859666 3.75E-66 dispersed
Csa03g02942 Csa-Chr3:28028638 Csa03g03564 Csa-Chr3:31859666 5.94E-53 dispersed
Csa03g03564 Csa-Chr3:31859666 Csa06g03058 Csa-Chr6:26295272 1.21E-69 dispersed
Csa03g03564 Csa-Chr3:31859666 Csa07g02054 Csa-Chr7:19866731 8.89E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31353 PF00046 Homeodomain 1.30E-14 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03564 K09338 - csv:101222778 528.094