Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03565 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCAAATTCGGTTCCAAATGAAGATGTCAATTTGGCTGATTTGACTGAGGAATCCGTTCATAGATTTGGGGAAACTATCAGGTTTAGGACGAGACAACGGTGGAGAAGGCGTCAAGTCCAAATCCCTCCTGAGACTCAGAATATCACTATGGAATTGAGTGAAATCATAGTGAATTCAGGCAATGGGAATTCATTACAGCCATTACAACCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAACTTGTGAAATTAACAATGAAGCTTTGGAAGATGGAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGTCTAGAGACCCTGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCATGCCTTTATCGATGGTTACATCTACATTCAGATGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACAAAAAACGTGACTCCAATTTATGGGCGTGGCAGCAATACACCTGTGACAGAGGAGGATGCTACACTTAAGATTCCTCCAAGGCCCCATGCTCGAAAGGTTGAAAGTTTGAGGCAAACCATCCAGAGGACTCCATTTAGTTTCCCAGTGGAGGATATGATTCGGCGATTAGGAAACAGATTCGATTTTAATCGTGATCTAGACCAACCACCAGAGCCAGATAGCTCAAATGAAACATTTGGTAGATCTCCAACATTGTTGAATAGGATTTTAACATCCAGGGGTATTCGTAGAGAACGAATTTCATTGCCTCATGATGATGTAGGAGATTTAGCACACACTGATGTGTCTAGCATTGAGGCAGGGGAAACACGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGAACGCGAGTTTCTTCTCTTACTTCTGCGTTTAATTCTGCTGATAGGCTACCAGATGGTTTTTTGTATACTGATCCGCTCATCCCTAGAAGCCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCTTTCTCTAGTATTGCTGCTGTCATCAATTCTGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTTTCCATTTCAACATCATCCTCCAGAAGGAGAAATGATGCTTTACAAGTTTCGGATGTAGACAGTGGAAACTCTCGAGCACCCAGACGGAGAAGATTAGCTTGA 1275 42.67 MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEESVHRFGETIRFRTRQRWRRRQVQIPPETQNITMELSEIIVNSGNGNSLQPLQPGEGSITAEERKNETGKTCEINNEALEDGKTENKSDVEKGSDSDGSFFDCNICLDLSRDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKNVTPIYGRGSNTPVTEEDATLKIPPRPHARKVESLRQTIQRTPFSFPVEDMIRRLGNRFDFNRDLDQPPEPDSSNETFGRSPTLLNRILTSRGIRRERISLPHDDVGDLAHTDVSSIEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDALQVSDVDSGNSRAPRRRRLA* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31876042 31879209 - CsaV3_3G038710.1 Csa03g03565 524470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03565 424 SUPERFAMILY RING/U-box 137 194 - -
Csa03g03565 424 MobiDBLite consensus disorder prediction 83 133 - -
Csa03g03565 424 SMART ring_2 141 181 IPR001841 -
Csa03g03565 424 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Csa03g03565 424 MobiDBLite consensus disorder prediction 393 413 - -
Csa03g03565 424 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Csa03g03565 424 MobiDBLite consensus disorder prediction 98 133 - -
Csa03g03565 424 CDD RING-HC_AtRMA_like 139 183 - -
Csa03g03565 424 MobiDBLite consensus disorder prediction 393 424 - -
Csa03g03565 424 MobiDBLite consensus disorder prediction 347 366 - -
Csa03g03565 424 PANTHER OS01G0830200 PROTEIN 19 421 - -
Csa03g03565 424 Pfam Zinc finger, C3HC4 type (RING finger) 141 186 - -
Csa03g03565 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 421 IPR045103 GO:0005783|GO:0006511|GO:0061630
Csa03g03565 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 200 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02570 Csa-Chr3:24097307 Csa03g03565 Csa-Chr3:31876042 9.90E-07 dispersed
Csa03g02943 Csa-Chr3:28042945 Csa03g03565 Csa-Chr3:31876042 1.04E-37 dispersed
Csa03g03565 Csa-Chr3:31876042 Csa06g02866 Csa-Chr6:24968539 2.76E-26 dispersed
Csa03g03565 Csa-Chr3:31876042 Csa02g02021 Csa-Chr2:18695130 1.69E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03565 K10666 - csv:101220497 836.254