Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03575 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGATCCTTTATTGTGGAGCAGAGAGCTTGAAAAACATTCTTATGGGGAATTTTCTTTTGCTGTGGTTCAGGCTAATGAGGTAATTGAGGATAATAGTCAGGTTGAGACTGGCCCTGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATCTAATGAGGCTTGCTCAAGAAAATGGAAACATAACTGAAGATATTCTTCGAAGTGCAGTTTGTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGACGGTCATGGGGAATAAAACCAACAATTGCAGCTATGGGATCTTGTTGTCTGGTGGGAGTTATCTGGAGAGGTACATTATTCGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAGCAGTTGACAAGGGATCACAATGCAAGTATCGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCTGATGACTCACACATTGTTGTTATGAAGCATGGAGTTTGGCGTATTAAAGGCATAATTCAGGTTTCCAGATCAATAGGTGATGCATATTTAAAAAAGCCAGAGTTTTCTCTCGATCCATCCTTTCCACGATTCCACCTTGCAGAGCCTCTTCGACGGCCTGTTCTTACTGCAGAACCATCGTTAAGTACGAAAGTTCTACAACCTAGTGACAAATTTCTCATATTTGCATCTGATGGCCTCTGGGAGCATCTAACGAATCAACAAGCAGTCGAGATTGTGTATAATAACCCAAGAGCAGGAATTGCAAAAAGACTTGTTAAAACAGCACTAACCGAGGCTGCAAGGAAGAGGGAAATGAGATACGATGATCTGAAGAAGCTCGAAAAGGGCATACGACGGTTCTTTCACGATGATATCACGGTTGTTGTCATATTTCTGGACCATGAGTTGCAAGGGAAGAAAGCACGTGTACCAGAGTTATCCGTTCGTGGGTTTACCAACACCGTTGGCCCATCAAATTTCAATGTTCTTCGAGGTATCGACGAGAATGGAAGGTCTGTTGGCTGA 1173 43.9 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDPLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVETGPDATFVGVYDGHGGPDASRFICDHLFRNLMRLAQENGNITEDILRSAVCATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLFVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTKVLQPSDKFLIFASDGLWEHLTNQQAVEIVYNNPRAGIAKRLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDHELQGKKARVPELSVRGFTNTVGPSNFNVLRGIDENGRSVG* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31923090 31928466 - CsaV3_3G038810.1 Csa03g03575 524480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03575 390 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Csa03g03575 390 PANTHER ALPHABET, ISOFORM E-RELATED 6 368 - -
Csa03g03575 390 Gene3D - 28 358 IPR036457 -
Csa03g03575 390 CDD PP2Cc 47 348 IPR001932 -
Csa03g03575 390 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
Csa03g03575 390 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 368 - -
Csa03g03575 390 Pfam Protein phosphatase 2C 69 316 IPR001932 -
Csa03g03575 390 SUPERFAMILY PP2C-like 52 349 IPR036457 -
Csa03g03575 390 SMART PP2C_4 43 346 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03575 Csa-Chr3:31923090 Csa07g00698 Csa-Chr7:4993281 1.13E-150 dispersed
Csa03g03575 Csa-Chr3:31923090 Csa02g01405 Csa-Chr2:13428092 9.15E-153 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03575 K01102 - csv:101222146 788.489