Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03592 ATGCTCCAACAGCGTCTGTTTACGTATTTTACTCTCGTTGTCTATTTCACGATTCTGACTTCACTTGCTCGGGCATTCACTAATCCGCCGGATGTTATAGCTCTTCAGGATTTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGAGGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATCTCACTGGGAATCTTGGAGGGCAGCTCAGCAACCTCATCAATTTGAAGCAATTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGTGACTCATATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTATCTTATATGGGAAATCTCCGACATCTAAATCTTAGCCATAATACTCTATCTGGTGTGATTGGAAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTTACTGGAGATTTGCCAAGTTCATTTGGTTCCCTGACAAACATCACTAGACTGTTCTTGCAGAATAACAAATTCACTGGATCAGTTGCCTACTTGTCTCACCTTCCATTAATTGACTTGAACATCCAAGACAATTATTTTAGTGGCATTATTCCGGAAAATTTTAGAAATATTCCAAATTTGTGGATTGGGGGTAATAGGTTGCGTCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTAGAAAAAACACCTGTTGGGCAGGACATCAGTGGTCCTCCAACAACGAAGTCAAACGCCATCCAGAATTATCCCTCTTGGAGTGTAGTCAGGCATGAGAAGAAAAGACTTGGTCCTGGTGGAATGGTTCTCCTGGTTGGTGGGTTAACACTAGTTGTAACCTTTGCAGCACTCTTTTTAGTATTTGCCATGAAGAAAGTGCATGAAAATAACATAAATTTGAAGATTGGGAACATATTACCCCGTTCTCTTCCTCTGGACAAAGCTGAAGATGATTCGTCTGCTGCACCAGAAGAAAGCTCACAAAACTTTCCCTTGGGTTCTCAACTGATGGGTGTTCCAAGGCCTATACCTTTATTAAATCACACGAGAACCGAGAAAGTATCTGGAAGAAGAGGTTTCTCAAAGAGATGCAGGATTCTAGTGAGAACAAAAGTTTACACTCTGGCAGAGCTTCAATCCGCTACCAACAACTTTAGTCAAGAGAATCTTCTAGGAGAGGGATCTCTTGGTGCTGTTTATAGGGCTGAATTTCCCGACGGCCAAGTTTTGGCTGTGAAAAATATCCACATGGGAACGCTCTTGTTTACAGAAGAAGAGCAGTTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATCGTTACGCTGATTGGATACTGTGTAGAGTATGGACAACATATACTCGGATATGAATACGTTCGAAATCTTTCTCTCGACGAAGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGCCTCCAGATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATCTGCATACGAGTTTTTTCCCTCCATTTGCTCACTGCAATCTAAAGGCTGCCAATATCTTACTGGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGAGCAATAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGCTGATAGAGGCTACCTTGCACCTGAACATGGCCAACCAGTATTTGATAATACGAGAAGTGATGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATATGACAATTTGAAACCGAGGAAAGAGCAATTGTTGGTGAAATGGGCTTCATCTCAGCTTCATGTCAACACGAGTTTAGAACAAATGGTTGATCCAAGCATCAAAGGAACATTTTCCTCCAAGGCTCTCTCAAGCTTTGTGGATATTGTCTCCCTTTGTATACAGCCTGTGAAGGAATTTCGGCCACCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGTGAAATGTGTTGCTGCATCAAATGAAACTGAAGTGAATCCTTTTGAGAAATCTTTTCGTTCTACCAACACTGGCTTTGTAAGTTCTCCAGCATATAGCTATTCTTCTACCCAGAAGGCTACTTGA 2226 41.69 MLQQRLFTYFTLVVYFTILTSLARAFTNPPDVIALQDLYSAMNYPLELKGWRKEGGDPCEESWTGVSCSGSSVIYLKLHGLNLTGNLGGQLSNLINLKQLDVSSNRLTGEIPHNLPPNVTHINMAFNHLSQNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFTGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSHLPLIDLNIQDNYFSGIIPENFRNIPNLWIGGNRLRPEVNSPPWDFPLEKTPVGQDISGPPTTKSNAIQNYPSWSVVRHEKKRLGPGGMVLLVGGLTLVVTFAALFLVFAMKKVHENNINLKIGNILPRSLPLDKAEDDSSAAPEESSQNFPLGSQLMGVPRPIPLLNHTRTEKVSGRRGFSKRCRILVRTKVYTLAELQSATNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNIHMGTLLFTEEEQFLDVVWTASRLRHPNIVTLIGYCVEYGQHILGYEYVRNLSLDEALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELMPRICDCGLSVLRPLVSNRVKTKASEIVSADRGYLAPEHGQPVFDNTRSDVYSFGVLLLELVTGRKPYDNLKPRKEQLLVKWASSQLHVNTSLEQMVDPSIKGTFSSKALSSFVDIVSLCIQPVKEFRPPMSEIVEHLTNLQRKMEMVKCVAASNETEVNPFEKSFRSTNTGFVSSPAYSYSSTQKAT* 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32042056 32047281 + CsaV3_3G038980.1 Csa03g03592 524497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03592 741 SUPERFAMILY L domain-like 27 238 - -
Csa03g03592 741 ProSiteProfiles Protein kinase domain profile. 415 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03592 741 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 708 - -
Csa03g03592 741 SUPERFAMILY Protein kinase-like (PK-like) 392 692 IPR011009 -
Csa03g03592 741 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Csa03g03592 741 SMART LRR_typ_2 164 187 IPR003591 -
Csa03g03592 741 SMART LRR_typ_2 140 163 IPR003591 -
Csa03g03592 741 SMART LRR_typ_2 94 118 IPR003591 -
Csa03g03592 741 SMART LRR_typ_2 188 211 IPR003591 -
Csa03g03592 741 MobiDBLite consensus disorder prediction 343 363 - -
Csa03g03592 741 Gene3D Ribonuclease Inhibitor 28 257 IPR032675 -
Csa03g03592 741 Gene3D Transferase(Phosphotransferase) domain 1 493 714 - -
Csa03g03592 741 Pfam Protein tyrosine and serine/threonine kinase 418 691 IPR001245 GO:0004672|GO:0006468
Csa03g03592 741 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 4 708 - -
Csa03g03592 741 Gene3D Phosphorylase Kinase; domain 1 379 492 - -
Csa03g03592 741 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03592 - - - csv:101204194 1440.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03592 Csa-Chr3:32042056 Csa06g00324 Csa-Chr6:2405503 5.31E-153 dispersed
Csa03g03593 Csa-Chr3:32048441 Csa03g03592 Csa-Chr3:32042056 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g00420 . 31 790 Strubbelig Receptor Gene Family AT4G03390 62.3 4.6e-208 721.5
Csa06g03601 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.4 1.0e-159 560.8
Csa07g02300 CCT 382 689 Strubbelig Receptor Gene Family AT4G03390 56.2 1.1e-89 328.2
Csa03g03592 . 17 736 Strubbelig Receptor Gene Family AT5G06820 53.3 7.0e-182 634.4
Csa03g03593 . 18 704 Strubbelig Receptor Gene Family AT5G06820 50.7 8.6e-164 574.3
Csa06g00324 . 22 697 Strubbelig Receptor Gene Family AT1G78980 60.6 1.7e-193 672.9
Csa03g02807 CCT 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Csa07g02300 CCT 24 692 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-125 446.4
Csa06g00324 . 20 674 Strubbelig Receptor Gene Family AT3G13065 51.2 5.1e-142 501.9
Csa01g03495 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Csa03g03592 . 17 736 Strubbelig Receptor Gene Family AT5G06820 53.3 7.0e-182 634.4
Csa03g03593 . 18 704 Strubbelig Receptor Gene Family AT5G06820 50.7 8.6e-164 574.3
Csa07g00420 . 31 790 Strubbelig Receptor Gene Family AT4G03390 62.3 4.6e-208 721.5
Csa06g03601 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.4 1.0e-159 560.8
Csa07g02300 CCT 382 689 Strubbelig Receptor Gene Family AT4G03390 56.2 1.1e-89 328.2
Csa06g00324 . 20 674 Strubbelig Receptor Gene Family AT3G13065 51.2 5.1e-142 501.9
Csa06g00324 . 22 697 Strubbelig Receptor Gene Family AT1G78980 60.6 1.7e-193 672.9
Csa03g02807 CCT 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Csa07g02300 CCT 24 692 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-125 446.4
Csa03g02807 CCT 1 719 Strubbelig Receptor Gene Family AT1G53730 59.7 1.0e-214 743.4
Csa07g02300 CCT 1 714 Strubbelig Receptor Gene Family AT1G53730 59.7 1.1e-184 643.7
Csa06g00324 . 15 682 Strubbelig Receptor Gene Family AT1G53730 52.0 4.0e-158 555.4
Csa03g02807 CCT 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 1.2e-188 656.8
Csa07g02300 CCT 6 704 Strubbelig Receptor Gene Family AT3G14350 56.0 5.7e-170 594.7
Csa04g00359 . 21 203 Strubbelig Receptor Gene Family AT3G14350 51.1 2.0e-42 171.0
Csa01g03495 . 138 712 Strubbelig Receptor Gene Family AT4G22130 61.3 1.5e-184 642.9
Csa03g02807 CCT 398 726 Strubbelig Receptor Gene Family AT4G22130 63.1 1.2e-120 430.6
Csa07g02300 CCT 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Csa07g00420 . 458 782 Strubbelig Receptor Gene Family AT4G22130 58.0 3.3e-107 386.0
Csa06g03601 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.8 5.1e-100 362.1
Csa06g00324 . 386 696 Strubbelig Receptor Gene Family AT4G22130 55.9 2.8e-98 356.3
Csa03g03592 . 387 702 Strubbelig Receptor Gene Family AT4G22130 50.6 9.4e-86 314.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78062 PF07714 PK_Tyr_Ser-Thr 4.10E-33 CL0016 Csa PK