Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03592 ATGCTCCAACAGCGTCTGTTTACGTATTTTACTCTCGTTGTCTATTTCACGATTCTGACTTCACTTGCTCGGGCATTCACTAATCCGCCGGATGTTATAGCTCTTCAGGATTTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGAGGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATCTCACTGGGAATCTTGGAGGGCAGCTCAGCAACCTCATCAATTTGAAGCAATTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGTGACTCATATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTATCTTATATGGGAAATCTCCGACATCTAAATCTTAGCCATAATACTCTATCTGGTGTGATTGGAAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTTACTGGAGATTTGCCAAGTTCATTTGGTTCCCTGACAAACATCACTAGACTGTTCTTGCAGAATAACAAATTCACTGGATCAGTTGCCTACTTGTCTCACCTTCCATTAATTGACTTGAACATCCAAGACAATTATTTTAGTGGCATTATTCCGGAAAATTTTAGAAATATTCCAAATTTGTGGATTGGGGGTAATAGGTTGCGTCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTAGAAAAAACACCTGTTGGGCAGGACATCAGTGGTCCTCCAACAACGAAGTCAAACGCCATCCAGAATTATCCCTCTTGGAGTGTAGTCAGGCATGAGAAGAAAAGACTTGGTCCTGGTGGAATGGTTCTCCTGGTTGGTGGGTTAACACTAGTTGTAACCTTTGCAGCACTCTTTTTAGTATTTGCCATGAAGAAAGTGCATGAAAATAACATAAATTTGAAGATTGGGAACATATTACCCCGTTCTCTTCCTCTGGACAAAGCTGAAGATGATTCGTCTGCTGCACCAGAAGAAAGCTCACAAAACTTTCCCTTGGGTTCTCAACTGATGGGTGTTCCAAGGCCTATACCTTTATTAAATCACACGAGAACCGAGAAAGTATCTGGAAGAAGAGGTTTCTCAAAGAGATGCAGGATTCTAGTGAGAACAAAAGTTTACACTCTGGCAGAGCTTCAATCCGCTACCAACAACTTTAGTCAAGAGAATCTTCTAGGAGAGGGATCTCTTGGTGCTGTTTATAGGGCTGAATTTCCCGACGGCCAAGTTTTGGCTGTGAAAAATATCCACATGGGAACGCTCTTGTTTACAGAAGAAGAGCAGTTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATCGTTACGCTGATTGGATACTGTGTAGAGTATGGACAACATATACTCGGATATGAATACGTTCGAAATCTTTCTCTCGACGAAGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGCCTCCAGATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATCTGCATACGAGTTTTTTCCCTCCATTTGCTCACTGCAATCTAAAGGCTGCCAATATCTTACTGGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGAGCAATAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGCTGATAGAGGCTACCTTGCACCTGAACATGGCCAACCAGTATTTGATAATACGAGAAGTGATGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATATGACAATTTGAAACCGAGGAAAGAGCAATTGTTGGTGAAATGGGCTTCATCTCAGCTTCATGTCAACACGAGTTTAGAACAAATGGTTGATCCAAGCATCAAAGGAACATTTTCCTCCAAGGCTCTCTCAAGCTTTGTGGATATTGTCTCCCTTTGTATACAGCCTGTGAAGGAATTTCGGCCACCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGTGAAATGTGTTGCTGCATCAAATGAAACTGAAGTGAATCCTTTTGAGAAATCTTTTCGTTCTACCAACACTGGCTTTGTAAGTTCTCCAGCATATAGCTATTCTTCTACCCAGAAGGCTACTTGA 2226 41.69 MLQQRLFTYFTLVVYFTILTSLARAFTNPPDVIALQDLYSAMNYPLELKGWRKEGGDPCEESWTGVSCSGSSVIYLKLHGLNLTGNLGGQLSNLINLKQLDVSSNRLTGEIPHNLPPNVTHINMAFNHLSQNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFTGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSHLPLIDLNIQDNYFSGIIPENFRNIPNLWIGGNRLRPEVNSPPWDFPLEKTPVGQDISGPPTTKSNAIQNYPSWSVVRHEKKRLGPGGMVLLVGGLTLVVTFAALFLVFAMKKVHENNINLKIGNILPRSLPLDKAEDDSSAAPEESSQNFPLGSQLMGVPRPIPLLNHTRTEKVSGRRGFSKRCRILVRTKVYTLAELQSATNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNIHMGTLLFTEEEQFLDVVWTASRLRHPNIVTLIGYCVEYGQHILGYEYVRNLSLDEALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELMPRICDCGLSVLRPLVSNRVKTKASEIVSADRGYLAPEHGQPVFDNTRSDVYSFGVLLLELVTGRKPYDNLKPRKEQLLVKWASSQLHVNTSLEQMVDPSIKGTFSSKALSSFVDIVSLCIQPVKEFRPPMSEIVEHLTNLQRKMEMVKCVAASNETEVNPFEKSFRSTNTGFVSSPAYSYSSTQKAT* 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32042056 32047281 + CsaV3_3G038980.1 Csa03g03592 524497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03592 741 SUPERFAMILY L domain-like 27 238 - -
Csa03g03592 741 ProSiteProfiles Protein kinase domain profile. 415 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03592 741 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 708 - -
Csa03g03592 741 SUPERFAMILY Protein kinase-like (PK-like) 392 692 IPR011009 -
Csa03g03592 741 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Csa03g03592 741 SMART LRR_typ_2 164 187 IPR003591 -
Csa03g03592 741 SMART LRR_typ_2 140 163 IPR003591 -
Csa03g03592 741 SMART LRR_typ_2 94 118 IPR003591 -
Csa03g03592 741 SMART LRR_typ_2 188 211 IPR003591 -
Csa03g03592 741 MobiDBLite consensus disorder prediction 343 363 - -
Csa03g03592 741 Gene3D Ribonuclease Inhibitor 28 257 IPR032675 -
Csa03g03592 741 Gene3D Transferase(Phosphotransferase) domain 1 493 714 - -
Csa03g03592 741 Pfam Protein tyrosine and serine/threonine kinase 418 691 IPR001245 GO:0004672|GO:0006468
Csa03g03592 741 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 4 708 - -
Csa03g03592 741 Gene3D Phosphorylase Kinase; domain 1 379 492 - -
Csa03g03592 741 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03592 Csa-Chr3:32042056 Csa06g00324 Csa-Chr6:2405503 5.31E-153 dispersed
Csa03g03593 Csa-Chr3:32048441 Csa03g03592 Csa-Chr3:32042056 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78062 PF07714 PK_Tyr_Ser-Thr 4.10E-33 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03592 - - csv:101204194 1440.63