Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03593 ATGGCCCAGCTCCTCCGTCCTTTACAGTATTTCAATGTCTTTGTCTTCTTGACAATCCTGACTTCAGTCGTTCAGTGCTTTACTGACCCCCTCGATGTTGTAGCTCTTCTCGATCTGTATAGTACGCTAAACTACCCAACTGTGCTTAAAGGATGGAGAAAAGATGGTGGGGATCCTTGCGATGGAACGTGGACCGGGGTGTTTTGTGCTGGTTCATCTGTCATAAACCTTACACTTAATAGACTAAACATTTCTGGAAATCTTGGAGATCAGCTTTATCTTCTTCATAATTTGAAGCAACTGGATGCTAGTTCCAATACAATTATGGGTGAAATTCCTTGTGGCTTACCCCCGAATATCATTAATATGAATCTAAGCCATAATGCCCTATCTGGCCCCATTGGGAATGTTTTTTCCGGCTTACAAAGTCTTATGGAGATGGATCTGTCATACAACGAGTTCACTGGAGATTTATCAAGTTCATTTGCTTCTTTGACTAATCTCAATAGGCTGTTCTTGCAGAAAAACAAATTCACAGGACCAGTTTCCTACTTATCTGACCTTCCATTAACTGATTTGAACATCCAAGACAATTACTTTAGTGGCATTATTCCAGAGCATTTTATGACAATCCCAAATTTATGGACTGCGGGAAATATGTTCGATTTAAGTAACTCTCCACCCTGGGATTTTTCTGTGGAAACAACACCTTTGACACAAAACAATAGTAACCCTCCATTAACAGAACCAATCATCATTGAGAAATGTCCCTACAAGGAAAAGATTGGGAAAGGGAGGGAAAGATTGGGTCCCGGTGGAATAGCTATGGTGGCTGGTGGAGGTGGTTTTGCATTAATCTTTGCAGCTCTCTTCATTGCAATCTGCAAGACACAAATATGTGCAAAGCAAAGGAGCATGAAGCACATCGCCATGTGTCTTCCAGTCAGCAAAGCTGAAGACGGTTATTCCACTGCACCAGATGGCAGCCCCCATATCTTGTCTCTCAGTTCTCCAGTCGTAGTTGGCGGTCTGAATCGTGCCTGTCCTACTTGTTGTGCTAGAACTGAGAGGGGATATAGCAGAAGTTTCTCTGAGAGATCCAGTTTCCCAGGAAAAACAAAAACTTACACTGTGGCAGAGCTTGAATCCGCAACTAACATGTACAGTGAAGAAAACCTTCTTGGAGAGGGATCTCTTGGTTCTGTCTATAAAGCTGAATTTCCTGATGGCCAAATTTTGGCTGTGAAAAGGGTTGATATGGTGGCACTCTCTTTCACAAAAGAACAATATTTTTTGGATGTGGTCTGCACTGTTTCCCGTTTGAGGCACCCTAACATCGTTAGTCTTTTGGGATACAGTGTAGAGAATGGAGAGCATTTACTAGCGTATGAGTATGTCAGGAATCTGTCTCTTGACGATGCTCTACACAGTGTAGCACACAACCCTCTATCCTGGAGTGTTCGAGTCCAAATTGCTCATGGAGTTGCCAAGGCTTTGGATTACTTGCATAATGCCTTTTTCCCACCATTTGCTCACTGCAATTTGAAGGCCGCCAACATCATGCTTGATGAAGAATTGATGCCAAAGATTTGTGACTGTGGTCTGTCTGTGTTGAAGCCTCTTGTAAGCAATAGAGTTAAAATCAAGGCTGCTCAAATTACTATTGCTGACACTGCCTACTTTGCACCTGAATATGGCCAATATGGGATTGATTATACCAAAAGTGATGTGTATGCATTTGGAGTTTTGTTTTTGGAGCTTATAACCGGAAAGAAACCGAATGATTTGAGACCAGGGATGGAGCAATCTCTATCAAGATGGGCGTCATTTCAGCTTCACGACTGTGGGAATCTTGATGAGATTATTGATCCTGATATTAAAGGAACATTATCTTCCAAGGTTCTCTCTCGCTGTGCTGATATTATCACCCTTTGCATACAGCCTGTAATGGAACGTCGACCGCCTATGTTTGCCATTGTTGGATACCTGGCAAGTATTCAGAGGAAGGTCGAGATGGAAAAATGTGCAGCAGTGGAAGGTAAAGTAGTTGACATATTCGAAAAATCATTCCGTACAACTAACACAGGGTTCATAAGCTCGCCATCATATAGTTGCTCATCCATATGA 2127 42.31 MAQLLRPLQYFNVFVFLTILTSVVQCFTDPLDVVALLDLYSTLNYPTVLKGWRKDGGDPCDGTWTGVFCAGSSVINLTLNRLNISGNLGDQLYLLHNLKQLDASSNTIMGEIPCGLPPNIINMNLSHNALSGPIGNVFSGLQSLMEMDLSYNEFTGDLSSSFASLTNLNRLFLQKNKFTGPVSYLSDLPLTDLNIQDNYFSGIIPEHFMTIPNLWTAGNMFDLSNSPPWDFSVETTPLTQNNSNPPLTEPIIIEKCPYKEKIGKGRERLGPGGIAMVAGGGGFALIFAALFIAICKTQICAKQRSMKHIAMCLPVSKAEDGYSTAPDGSPHILSLSSPVVVGGLNRACPTCCARTERGYSRSFSERSSFPGKTKTYTVAELESATNMYSEENLLGEGSLGSVYKAEFPDGQILAVKRVDMVALSFTKEQYFLDVVCTVSRLRHPNIVSLLGYSVENGEHLLAYEYVRNLSLDDALHSVAHNPLSWSVRVQIAHGVAKALDYLHNAFFPPFAHCNLKAANIMLDEELMPKICDCGLSVLKPLVSNRVKIKAAQITIADTAYFAPEYGQYGIDYTKSDVYAFGVLFLELITGKKPNDLRPGMEQSLSRWASFQLHDCGNLDEIIDPDIKGTLSSKVLSRCADIITLCIQPVMERRPPMFAIVGYLASIQRKVEMEKCAAVEGKVVDIFEKSFRTTNTGFISSPSYSCSSI* 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32048441 32053263 + CsaV3_3G038990.1 Csa03g03593 524498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03593 708 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Csa03g03593 708 ProSiteProfiles Protein kinase domain profile. 388 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03593 708 Gene3D Transferase(Phosphotransferase) domain 1 466 688 - -
Csa03g03593 708 PANTHER LEUCINE RICH REPEAT KINASE 2 12 680 - -
Csa03g03593 708 Gene3D Ribonuclease Inhibitor 29 251 IPR032675 -
Csa03g03593 708 Gene3D Phosphorylase Kinase; domain 1 350 465 - -
Csa03g03593 708 Pfam Protein kinase domain 388 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03593 708 SUPERFAMILY L domain-like 26 215 - -
Csa03g03593 708 SUPERFAMILY Protein kinase-like (PK-like) 364 663 IPR011009 -
Csa03g03593 708 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN 12 680 - -
Csa03g03593 708 Pfam Leucine rich repeat 122 178 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03593 Csa-Chr3:32048441 Csa06g00324 Csa-Chr6:2405503 4.30E-122 dispersed
Csa03g03593 Csa-Chr3:32048441 Csa03g03592 Csa-Chr3:32042056 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78063 PF00069 Pkinase 9.00E-34 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03593 - - csv:101204436 1383.62