Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03598 ATGGCTTCTTCCAATATTAAAAACAGCTCCATCATCATCCAGCAAGAAGAAGAAGAAGAAAAACAACAACAACTTCATCATCATCATCATCATCATCATCAACAACCTCAATTTCTTCAAAATCCAAGCTTTGTCATACCATCAAACTCAAAAAATTCCTCATTATTCAATTTCCAAAACCCCAATTTCTCTGATCATCATCAGCATCATCCTCATCAATTGCCTTTCTCCATGAATCTTCCTTCCATCTCTTCAAATTTCTTAAGCAAAGATGGAGGAGGAGATGATTTGGGAGAATTGGATCAAGCTCTTTTTCTCTATCTTGATGGACAAGAACCCTCTTCAACCACTACTCAAGACCAAAGACAGAGTTCGGGTATGAGACCTCCGACGTTGAATATCTTCCCGTCGCAGCCGATGCATGTCGATTCATTACCAATAAAAGGAAATACAACATTGATAAACCATGGTGGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAAAGAGTTGGCCAACCAACGCAGCAATGGAGGAGCCATTGCATCTGCTCCAGCTCCAACCCAAACTACAACTACAACCGAACCTCATCCCAAACCTCCTAAACGTGAGCCAAACAAGAAAGGGCTCACCTCAAGTTCCGAGCAAGAAGGACCCAAAACTCCAGACCCTAAGACCTTAAGAAGATTAGCTCAAAATCGAGAGGCTGCTAGAAAAAGCAGGCTGAGAAAAAAGGCATACGTTCAGCAATTAGAGATGAGTAGGATTAAGCTGACGCAGCTGGAACAAGAGCTACAAAGAGCAAGAAATCAGGGCATGTTTTTGGGTGGAGGAGCCGCCATTTTAGGAGGACCTGACCAAGGACTTCCCTCCGGCTTCCATAACCTCAGCTCCGATGCTGCGGTGTTTGACATTGAGTACGGGAGGTGGCAAGAGGAACACCACCGGTTGATGTGCGAGCTACGAGCAGCGGTGCAAGAGCACCTACCGGAGAACGAGCTGCGATTGTACGTGGACAGCTGCCTAGCCCATTACGACGAGGTCTTGAACTTGAAGATGATGGTGGCTAAATCGGACATATTTCACCTTGTGTCCGGCATGTGGAAGACTCCGGCGGAGAGATGCTTCATGTGGATGGGCGATTTTAGACCCTCTGAGCTCATTAAGATAATAATGGGTCAAATAGAGCCATTAACAGAGCATCAAATATTAAACATTTGTGCACTGCAACAATCAACACAAGAAAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAATCGTTATCAGACACTATCACCTCTGATTCATTGAGCAGCCCTCCAAATATGGCTAACTATATGGGCCAAATGACTTTAGCCATCAATAAGCTCTCTACTCTTGAAGGCTTTGTAAGACAGGCAGACAACTTGAGACACCAAACGGTTCACCGACTGCAACAAATGTTGACAACTCGACAAGCAGCAAGATGTTTGTTAGCCATTGCTGAATATTTCCATAGGCTTCGAGCTTTGAGTTCCTTGTGGTTGGCTCGTCCAAGGCAAGATTAA 1557 44.51 MASSNIKNSSIIIQQEEEEEKQQQLHHHHHHHHQQPQFLQNPSFVIPSNSKNSSLFNFQNPNFSDHHQHHPHQLPFSMNLPSISSNFLSKDGGGDDLGELDQALFLYLDGQEPSSTTTQDQRQSSGMRPPTLNIFPSQPMHVDSLPIKGNTTLINHGGDSKIKASEPSKELANQRSNGGAIASAPAPTQTTTTTEPHPKPPKREPNKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARNQGMFLGGGAAILGGPDQGLPSGFHNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLYVDSCLAHYDEVLNLKMMVAKSDIFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQIEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQADNLRHQTVHRLQQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32084178 32092281 + CsaV3_3G039040.1 Csa03g03598 524503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03598 518 MobiDBLite consensus disorder prediction 110 228 - -
Csa03g03598 518 MobiDBLite consensus disorder prediction 110 132 - -
Csa03g03598 518 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 228 243 IPR004827 GO:0003700|GO:0006355
Csa03g03598 518 PANTHER TRANSCRIPTION FACTOR TGA9 98 517 - -
Csa03g03598 518 MobiDBLite consensus disorder prediction 169 196 - -
Csa03g03598 518 MobiDBLite consensus disorder prediction 144 158 - -
Csa03g03598 518 CDD bZIP_HBP1b-like 225 274 - -
Csa03g03598 518 Gene3D - 224 275 - -
Csa03g03598 518 ProSiteProfiles DOG1 domain profile. 300 514 IPR025422 GO:0006351|GO:0043565
Csa03g03598 518 SUPERFAMILY Leucine zipper domain 225 268 IPR046347 GO:0003700|GO:0006355
Csa03g03598 518 Pfam Seed dormancy control 318 392 IPR025422 GO:0006351|GO:0043565
Csa03g03598 518 Pfam Basic region leucine zipper 222 267 IPR004827 GO:0003700|GO:0006355
Csa03g03598 518 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 223 267 IPR004827 GO:0003700|GO:0006355
Csa03g03598 518 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 98 517 - -
Csa03g03598 518 SMART brlzneu 221 284 IPR004827 GO:0003700|GO:0006355
Csa03g03598 518 MobiDBLite consensus disorder prediction 18 37 - -
Csa03g03598 518 Coils Coil 244 271 - -
Csa03g03598 518 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03598 Csa-Chr3:32084178 Csa03g03707 Csa-Chr3:32935303 6.24E-130 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31357 PF14144 DOG1 8.60E-31 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03598 K14431 - csv:101204923 921.383