Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03604 ATGGAGATTAAAGTAGGGACTGTAGGTGGATCCAGTCCAATCGGGCGTCAATCGGATGATACTGGACTTGAATCGCTGCAATTCTGTGAAGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCTTTCACCGCACTTCTGGAACTCCCGGCGACGCAGGCTTTAGAGCTACTTCACTCGCCGGATTCCGCGACGGCGGCGGTTGTGAACGATGACTCCGTTCATCACTGTATCAAAGACGTTCCGAAACCCTACTTTAGTGCCTTCAATTGCAATTTGACCTTTCCGACGAACTCGGGTCTAATTGAACGTGTTACCAAGCTTTCGGTTTTGGCTAAAGAGCATTCGCCGGAGACGACAAGCTCAGTGCCGTTGAATTCGAGTGTGAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGACACCGATTCAAACCCTAATCCCTTGCAGACTTTAATCTCTGATCCGACGGTGGAGAACACGAACCAGAGGTCGGCGAAGAGGAAGGAACGCGAGAAAAAGGGAAGAGGGTCAACAAAGAAGAGCAAGAATGAAAGCAACGAGGATGCTGAAAAGCTTCCTTATGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACTGATAGCCATAGCCTAGCAGAGCGAGCAAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGCACAGCTCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGACTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATCGAAAGCATATTGGCTACAGAAAATGAACCCATACTCGAAAGCAACTTTCCAACGATGGTTTCGCCATTGATGTGGCCAGAAATCCCCGTAAATGGAACAAGACAACAATATCAACCCCAATGGCATTTTGACGGCTCAGTTAACCATCAAGGGTGGGCAAGGGATGAACATAATCATCATAATTTTAGCCCTCCTGAAAACTCTCTTTTAAGTTATGACTCTTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA 1110 47.12 MEIKVGTVGGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSATAAVVNDDSVHHCIKDVPKPYFSAFNCNLTFPTNSGLIERVTKLSVLAKEHSPETTSSVPLNSSVNLEKVKNEPTTDTDSNPNPLQTLISDPTVENTNQRSAKRKEREKKGRGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIESILATENEPILESNFPTMVSPLMWPEIPVNGTRQQYQPQWHFDGSVNHQGWARDEHNHHNFSPPENSLLSYDSSANSASLHSNQLKMEL* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32125102 32130846 + CsaV3_3G039100.1 Csa03g03604 524509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03604 369 CDD bHLH_AtBPE_like 197 282 - -
Csa03g03604 369 Coils Coil 247 267 - -
Csa03g03604 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 276 IPR036638 GO:0046983
Csa03g03604 369 MobiDBLite consensus disorder prediction 327 346 - -
Csa03g03604 369 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
Csa03g03604 369 MobiDBLite consensus disorder prediction 117 198 - -
Csa03g03604 369 PANTHER TRANSCRIPTION FACTOR BHLH60 20 368 - -
Csa03g03604 369 MobiDBLite consensus disorder prediction 117 164 - -
Csa03g03604 369 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 368 IPR024097 GO:0006355
Csa03g03604 369 SMART finulus 213 263 IPR011598 GO:0046983
Csa03g03604 369 Gene3D - 204 277 IPR036638 GO:0046983
Csa03g03604 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Csa03g03604 369 MobiDBLite consensus disorder prediction 180 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03604 Csa-Chr3:32125102 Csa05g02541 Csa-Chr5:26846039 3.10E-44 dispersed
Csa03g03604 Csa-Chr3:32125102 Csa07g00008 Csa-Chr7:185656 9.30E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31359 PF00010 HLH 1.40E-05 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03604 - - csv:101205014 722.62