Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03608 ATGGATGACCCTTCCACTAACTTCTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACCACTACCAGTTTCCACCCTTCTTCTTCTTCTTCTTCTTCAGACCCTCTTCGTCTTCCTCCTCCTCCACCTCCTCCTAATTTCTTCCCAACTTTCCACCACGCGCCGCCACCGCCATCGTCCCCGCCGCTCCGCCAAGCTCTCCCTCTCCTTAGGCTAAGCCCCACAAGATCATCATCACAAGAAAAAAACAACAACATTAAGGAATTAGATGATGAAAAGGAGGAAACTTTAATGAGAGTTGCACTTCATATAGGGTTACCAAGCCCTAGAGATCAAGAAATAGAAGATGAAGAAGAAGAAGATCAAGAAATAGAATATGAAGAAGAAGAAGAATTAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGTAGCAATTTCAGGGTTATGTTTGAGTAATAGTAGACTAAATAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGACCTACTCAATTCTCTTGTCCTGTTTGTTACAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAGTATAGGAGAGGACCAGAATCGTTAAGAGGAACACAACCAACAGGGATGTTAAGGCTGCCATGTTATTGCTGTTCACCAGGTTGTCGCAACAACATTGACCATCCAAGAGCAAAGCCATTAAAAGACTTTAGAACACTTCAAACTCATTACAAACGGAAGCATGGAATCAAGCCTTTTATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAAAGATCACTTAAAGACCATATCAAAGCCTTTGGTAATGGTCATGCTGCTTATAATCATAATCATAATAATAATAATCCTGATCTTCATCTTCATCGTCTTCATCATCGTCGTCAACGGTTCGATAATGAAGAGGATGATCATGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1062 40.49 MDDPSTNFFFTNLFKFNSPTTTSFHPSSSSSSSDPLRLPPPPPPPNFFPTFHHAPPPPSSPPLRQALPLLRLSPTRSSSQEKNNNIKELDDEKEETLMRVALHIGLPSPRDQEIEDEEEEDQEIEYEEEEELEELEEEEEEEVAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHNHNNNNPDLHLHRLHHRRQRFDNEEDDHAYSEVEQDHD* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32155979 32159092 - CsaV3_3G039140.1 Csa03g03608 524513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03608 353 Gene3D Classic Zinc Finger 174 197 - -
Csa03g03608 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 279 IPR013087 -
Csa03g03608 353 PANTHER ZINC FINGER PROTEIN WIP2 1 350 IPR043584 GO:0003700|GO:0010468
Csa03g03608 353 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Csa03g03608 353 SMART c2h2final6 259 279 IPR013087 -
Csa03g03608 353 SMART c2h2final6 175 197 IPR013087 -
Csa03g03608 353 Coils Coil 79 99 - -
Csa03g03608 353 PANTHER ZINC FINGER PROTEIN WIP2 1 350 - -
Csa03g03608 353 MobiDBLite consensus disorder prediction 35 64 - -
Csa03g03608 353 Coils Coil 114 145 - -
Csa03g03608 353 MobiDBLite consensus disorder prediction 16 92 - -
Csa03g03608 353 SUPERFAMILY beta-beta-alpha zinc fingers 171 197 IPR036236 -
Csa03g03608 353 MobiDBLite consensus disorder prediction 16 34 - -
Csa03g03608 353 Gene3D Classic Zinc Finger 235 317 - -
Csa03g03608 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
Csa03g03608 353 SUPERFAMILY beta-beta-alpha zinc fingers 241 279 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03608 Csa04g02111 CCT
Csa03g03608 Csa04g02111 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03608 Csa-Chr3:32155979 Csa04g01407 Csa-Chr4:14099785 5.74E-120 dispersed
Csa04g02111 Csa-Chr4:21785444 Csa03g03608 Csa-Chr3:32155979 1.31E-126 transposed
Csa05g01484 Csa-Chr5:17144798 Csa03g03608 Csa-Chr3:32155979 5.88E-99 transposed
Csa03g03608 Csa-Chr3:32155979 Csa07g02025 Csa-Chr7:19726107 4.32E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31360 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03608 - - csv:101208110 523.087