Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03622 ATGAATAACTTAACTGTTGAAACGGAAGATGTATTTTCCAGCTTGCTCGAGCTTGCTGCTAATGATGACATTGATGCCTTCAAGAGATCGATTGAGCGCGACCCTTCTGGTATTGATGAAATTGGATTATGGTATGGTCGCCTACGTGGTTCGAAGCAAATGACTAATGAGCAGAGAACGCCTTTAATGGTTGCTGCTACTTATGGTAGCACTGAGGTTTTGAAGCTTATTCTCTCTCTCTCTTGTGCTGATGTAAATCGCGCTGTCGGACTTGATAGAAGCACTGCCCTTCACTGTGCAGCCTCAGGTGGGGCTGGAAATGCTGTAGATATCGTGAAGCGGCTCTTAGCCGCGGGTGCTGATCCTAATATGGTTGATGAGAATGGACATCGACCTGTTGATGTGATTGTTGCCCCCTTAAGGCATGGCGAGCTTAAATCAATCCTTACAGAACTTCTTAAGACGAATGGTTTTTCTGGTGAAGGAAATCTTGATGTTGTAACAGGAGGTAGAGATTTGCATTCTTCTCGCCCTTCGTCTCCTCTGAATGTCCCCTCTTCATCGGAGTTAGTTTCTTCTCCAACAAAATCAAAACTAAGTGATTTTCCAATGTATTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGTATCTACTCTACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCTTGCTCACGTGCTTACTCTCATGATTGGACTGAGTGTCCTTTTGTCCATCCTGGAGAAAATGCTAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCGTGTCCTGATTTTCGGAAGGGCGCTTGCAGACGGGGAGATATGTGTGAATATGCTCATGGGGTGTTTGAGTGTTGGTTGCACCCAGCACAATATCGAACCCGACTTTGCAAAGATGGCACAAATTGCTCGAGAAGAGTCTGCTTTTTTGCACACACAACTGACGAATTGCGCCCTCTGTATGTATCGACTGGCTCTGCTGTTCCCTCACCTCGTTCTTGTACTTCTGGGGCTTCTGCCATGGATTATACTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCATTCACTCCTCCGATGTCTCCATCGGCCAATGGCATGTCTCACTCGTCTGTGCCTTGGCCCCAACCGAACGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATGCCTGTAGAGGACTTCGATTATCTGAGTGATTTTGATATGCAACAACAACAGCTCCTTAACGACTTGAATTGTCTTTCTCAACCACCTTTGAGTTCAAATTCATTGAACCGTTCTGGTCGTATGAAAACTATGACCCCCTCAAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAATCTCTGGCTTCTGCTGTTTTTTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAGCAACAGAATATGTTATCACCAATAAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTGTTGCAGGCCTCTTTTGGTGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCGGTGGGATCTCGATTGTCCATGTTAGCTCAGAGAGAGAAACAACAGTTTCGCAGCCTCAGTTCGCGTGAACTCGGTTCCAATTCTCCCTCTATTGTTGGTTCCCCTGCAAATTCTTGGTCCAAATGGGGACCTTCTAATGGAAGACCTGATTGGGCAGTCAATGCAGATGAAATGGGTAAACTTCGGCGATCGTCGTCTTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAACAGGCTCATCCCAATTTGGGTGTCGATAGTTTTGTATCCTCTGGTGAGAGTTCTAACATGAACTCACAAATGGAGTCAGTTGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTCGATCATCTCGTCGCACAACAGCAGTGA 2106 45.16 MNNLTVETEDVFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSTEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAGNAVDIVKRLLAAGADPNMVDENGHRPVDVIVAPLRHGELKSILTELLKTNGFSGEGNLDVVTGGRDLHSSRPSSPLNVPSSSELVSSPTKSKLSDFPMYSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTDELRPLYVSTGSAVPSPRSCTSGASAMDYTTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVPWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNRSGRMKTMTPSNLDDLFSAESSSPRYSDQSLASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQFRSLSSRELGSNSPSIVGSPANSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGVDSFVSSGESSNMNSQMESVDHAALGAWLEQMQLDHLVAQQQ* 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32257914 32262708 - CsaV3_3G039280.1 Csa03g03622 524527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03622 701 MobiDBLite consensus disorder prediction 575 601 - -
Csa03g03622 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Csa03g03622 701 SUPERFAMILY Ankyrin repeat 6 138 IPR036770 -
Csa03g03622 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Csa03g03622 701 Gene3D - 9 156 IPR036770 -
Csa03g03622 701 PANTHER UNKEMPT FAMILY MEMBER 1 698 IPR045234 -
Csa03g03622 701 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 698 - -
Csa03g03622 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Csa03g03622 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Csa03g03622 701 MobiDBLite consensus disorder prediction 169 199 - -
Csa03g03622 701 MobiDBLite consensus disorder prediction 575 602 - -
Csa03g03622 701 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Csa03g03622 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 127 - -
Csa03g03622 701 Gene3D - 271 334 - -
Csa03g03622 701 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Csa03g03622 701 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Csa03g03622 701 MobiDBLite consensus disorder prediction 173 199 - -
Csa03g03622 701 Pfam Ankyrin repeats (3 copies) 55 126 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01860 Csa-Chr2:17700459 Csa03g03622 Csa-Chr3:32257914 4.97E-55 dispersed
Csa03g02908 Csa-Chr3:27768387 Csa03g03622 Csa-Chr3:32257914 0 dispersed
Csa03g03622 Csa-Chr3:32257914 Csa05g00823 Csa-Chr5:6068842 1.10E-152 dispersed
Csa03g03622 Csa-Chr3:32257914 Csa06g01420 Csa-Chr6:12114956 3.30E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31363 PF12796 Ank_2 1.70E-09 CL0465 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03622 - - csv:101207646 1367.06