Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03626 ATGGAAAATCATGGTGATGACCCTAATAGTCCAAATCAAGGCTGTGAGAGGGCGGAGCCGGTGAGATCACGGTGGACTCCCAAGCCGGAGCAGATTCTAATTTTGGAGTCCATTTTCAATAGTGGAATGGTCAATCCTCCTAAAGATGAGACTGTTAGAATAAGAAAGCTTCTTGAAAAATTTGGCTCTGTTGGGGATGCTAATGTTTTTTACTGGTTTCAAAACCGTCGCTCTCGCTCTCGCCGTCGCCAACGTCAGCTACAAGCTGCCGCTACTCACCAAGGTAGCACCGGTGCAATTCACTACGATTGTGGTAACGTCAGCAGTGGCGGTTACAACGGTGGTAGTGGTGGTATTATGAATTTTGCTGGAGTTTCCTCTTCTTATCTCGGAGGAGGGTCCTCATCTTCGTCCTCCTCCGCTTCTGGGGTTGGCGGAGATTGTAGCGGTGGCAGTGGCGGCAGCAGTGGTTTTTCGATGTCAGGTCATATGGGTTTCTCAGAAGTTGATCAACAAATGGTTGTGACAAGTACTCCATCGTTTTGCCCTTCGGAAACCTCAAATTTAGAGTTTCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCAACAGAAGTACCAAAAGGAGCAGTGGATATGAAAGCAATGTTTGGGGAAGAGACAGTGTTAGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTCCATACTTTACAGCATGGTGAAAGCTACTTTCTGGTTTCAAGACCAACATGA 774 45.35 MENHGDDPNSPNQGCERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGSTGAIHYDCGNVSSGGYNGGSGGIMNFAGVSSSYLGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPSFCPSETSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGISLHTLQHGESYFLVSRPT* 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32311997 32315729 + CsaV3_3G039320.1 Csa03g03626 524531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03626 257 MobiDBLite consensus disorder prediction 1 24 - -
Csa03g03626 257 SUPERFAMILY Homeodomain-like 18 90 IPR009057 -
Csa03g03626 257 Gene3D - 22 89 - -
Csa03g03626 257 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 256 IPR044558 GO:0003700|GO:0048830
Csa03g03626 257 SMART HOX_1 20 87 IPR001356 GO:0003677
Csa03g03626 257 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
Csa03g03626 257 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 256 - -
Csa03g03626 257 Pfam Homeodomain 22 82 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03626 - - - csv:101207317 426.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03626 Csa-Chr3:32311997 Csa06g03668 Csa-Chr6:29480418 8.07E-46 dispersed
Csa03g03626 Csa-Chr3:32311997 Csa01g00712 Csa-Chr1:4514227 1.16E-13 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00712 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 8.8e-50 194.5
Csa03g03626 . 4 253 Wox Gene Family AT3G03660 52.9 5.5e-53 204.9
Csa03g03626 . 19 258 Wox Gene Family AT5G17810 50.2 2.2e-53 206.1
Csa02g01931 . 5 161 Wox Gene Family AT1G46480 65.1 1.3e-50 196.4
Csa01g00712 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 8.8e-50 194.5
Csa02g01931 . 5 161 Wox Gene Family AT1G46480 65.1 1.3e-50 196.4
Csa03g03626 . 4 253 Wox Gene Family AT3G03660 52.9 5.5e-53 204.9
Csa03g03626 . 19 258 Wox Gene Family AT5G17810 50.2 2.2e-53 206.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005221 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31364 PF00046 Homeodomain 6.70E-13 CL0123 Csa TF