Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03626 ATGGAAAATCATGGTGATGACCCTAATAGTCCAAATCAAGGCTGTGAGAGGGCGGAGCCGGTGAGATCACGGTGGACTCCCAAGCCGGAGCAGATTCTAATTTTGGAGTCCATTTTCAATAGTGGAATGGTCAATCCTCCTAAAGATGAGACTGTTAGAATAAGAAAGCTTCTTGAAAAATTTGGCTCTGTTGGGGATGCTAATGTTTTTTACTGGTTTCAAAACCGTCGCTCTCGCTCTCGCCGTCGCCAACGTCAGCTACAAGCTGCCGCTACTCACCAAGGTAGCACCGGTGCAATTCACTACGATTGTGGTAACGTCAGCAGTGGCGGTTACAACGGTGGTAGTGGTGGTATTATGAATTTTGCTGGAGTTTCCTCTTCTTATCTCGGAGGAGGGTCCTCATCTTCGTCCTCCTCCGCTTCTGGGGTTGGCGGAGATTGTAGCGGTGGCAGTGGCGGCAGCAGTGGTTTTTCGATGTCAGGTCATATGGGTTTCTCAGAAGTTGATCAACAAATGGTTGTGACAAGTACTCCATCGTTTTGCCCTTCGGAAACCTCAAATTTAGAGTTTCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCAACAGAAGTACCAAAAGGAGCAGTGGATATGAAAGCAATGTTTGGGGAAGAGACAGTGTTAGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTCCATACTTTACAGCATGGTGAAAGCTACTTTCTGGTTTCAAGACCAACATGA 774 45.35 MENHGDDPNSPNQGCERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGSTGAIHYDCGNVSSGGYNGGSGGIMNFAGVSSSYLGGGSSSSSSSASGVGGDCSGGSGGSSGFSMSGHMGFSEVDQQMVVTSTPSFCPSETSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGISLHTLQHGESYFLVSRPT* 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32311997 32315729 + CsaV3_3G039320.1 Csa03g03626 524531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03626 257 MobiDBLite consensus disorder prediction 1 24 - -
Csa03g03626 257 SUPERFAMILY Homeodomain-like 18 90 IPR009057 -
Csa03g03626 257 Gene3D - 22 89 - -
Csa03g03626 257 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 256 IPR044558 GO:0003700|GO:0048830
Csa03g03626 257 SMART HOX_1 20 87 IPR001356 GO:0003677
Csa03g03626 257 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
Csa03g03626 257 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 256 - -
Csa03g03626 257 Pfam Homeodomain 22 82 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03626 Csa-Chr3:32311997 Csa06g03668 Csa-Chr6:29480418 8.07E-46 dispersed
Csa03g03626 Csa-Chr3:32311997 Csa01g00712 Csa-Chr1:4514227 1.16E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31364 PF00046 Homeodomain 6.70E-13 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03626 - - csv:101207317 426.402