Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03672 ATGTCTTCTGGGGCGGTTCGATTGCTTGTGTTGGATTTTGCCCTCTCTTTTATGTGGTTATGGTCGGGGGTTTTGGTTAAGATCTTTGTTTTTGGGATATTGGGGTTCGGAAATGATCTGGTTAGCGAGGTTGTCAAGGCTTCCTTTTCGATTCTCAACATGTTCTTCTTTGCGTTCCTGGTGAAAATTTCAAACGGGTCTGCTTATAATCCTCTTACCATCTTATCTGCTGCTTTTTCTGGGGATTTCAGTAAATTTCTGTTCACTGTTGGTGCCAGAATCCCTGCTCAGGGTGGAAAGTTAGAGGGGAAGCTTTTGAATTTGTTCTTATATTTGCACGTCAACGCTCTTTCTCACTCAATTCTAAAACTACGGAACCAACTGGTTTCACATACGGTCATACGGAGCAACGACCCCAACAGTTTGGAAGATATCTTGAGAAATGGTTTTATCACCGGTGTATCCTATATGTACTCTAGTTTATTCGAAGCATCCCGATGGTGTAACGCGGTCAACTTATTGGGAAAAAGGAGGGAAGTCACTTTGTGGAACTTGAAATTTTGGAATGAGGTGATGCTTGCAAAATGGCTGTGGTGGTTATCTCTGGAGGCACCAAAATCTTACCATTTACCTAAAATTTTAAATCTTGTGGGCTACCTTCACAATCAAACGTCAAAGGTAATAGGAGCTATTACTGCTGTTAGGCTGATTATCCATACGTTTCCCGAAGCAGGACGAGGGCCTCGTTTGGCCGTTGGCATCCATCATGGTGCTTTGACGGAAGGATTGTTAACATTTGCCATTGTATCTATCTCACTTGGACTTTCAAGGAAAATAGTTGGAAATTTCTTCATGAAGACTTGGATCTCAAGCTTATCCAAGTTAACTCTTCATATTCTCGGTTCCGACTTAACTGGTGGCTGTATGAACCCTGCATCTGTAATGGGATGGGCGTATGCTCGTGGGGAACATATAACAACAGAACATATTCTTGTATACTGGATCGCTCCAATTCAAGGAACTATAGCAGCGGTATTGACGTTTAAGTTAATATTTCGACAACCGAAACAAGAGAAAGTAAATATGAAGAAAAAATCAGAATGA 1104 41.49 MSSGAVRLLVLDFALSFMWLWSGVLVKIFVFGILGFGNDLVSEVVKASFSILNMFFFAFLVKISNGSAYNPLTILSAAFSGDFSKFLFTVGARIPAQGGKLEGKLLNLFLYLHVNALSHSILKLRNQLVSHTVIRSNDPNSLEDILRNGFITGVSYMYSSLFEASRWCNAVNLLGKRREVTLWNLKFWNEVMLAKWLWWLSLEAPKSYHLPKILNLVGYLHNQTSKVIGAITAVRLIIHTFPEAGRGPRLAVGIHHGALTEGLLTFAIVSISLGLSRKIVGNFFMKTWISSLSKLTLHILGSDLTGGCMNPASVMGWAYARGEHITTEHILVYWIAPIQGTIAAVLTFKLIFRQPKQEKVNMKKKSE* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32676430 32679619 + CsaV3_3G039780.1 Csa03g03672 524577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03672 367 PANTHER AQUAPORIN SIP2-1-RELATED 225 367 - -
Csa03g03672 367 PANTHER AQUAPORIN SIP2-1-RELATED 225 367 IPR044226 GO:0015267
Csa03g03672 367 PANTHER AQUAPORIN SIP2-1-RELATED 3 97 - -
Csa03g03672 367 SUPERFAMILY Aquaporin-like 225 363 IPR023271 -
Csa03g03672 367 Gene3D Glycerol uptake facilitator protein. 212 367 IPR023271 -
Csa03g03672 367 PANTHER AQUAPORIN SIP2-1-RELATED 3 97 IPR044226 GO:0015267
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03672 Csa-Chr3:32676430 Csa05g01259 Csa-Chr5:13418935 1.28E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03672 K09875 - csv:101214379 283.493