Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03685 ATGAAAGAAGATGATTCAAATTGGTTCTCAAAATGGGAACAAGAACTTCCTTCTCCTGATGAATTAATGCCTCTTTCTCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGACATCACTAACTCAAATCCTCCTAACGATTCTCATCCTCCGCCGCCTCCGCCGCCTCCTCCGGTTCTCATTCAGCCCACTTCTGCAGATTTTGCTGATTCAGGGGATTTGGGTTCTGGTGCCGGCGACGAACCTGCAAGAACTCTTAAACGCCCACGCCTTGTGTGGACTCCACAGCTTCATAAGCGATTCGTCGACGCTGTTGCTCATTTGGGGATCAAAAATGCCGTCCCCAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTGACTCGTGAGAACGTAGCTAGTCATTTGCAGAAATACCGGCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGCGGAGCTAACGGCGGTGCTGGATTGGTTTCAACCGCTTCAGATCCCGCCACCGACCATTTGTTTGCGAGCTCCCCTGTTCCACCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCGTCGGAGCTCTGCAGCATCACCACCACCAGATGGCGGCAGCTGCCGCTGCCGCTCAGTACCATCGACAAGTAGCTCATTTTGGGTCGTCGCCGCCGACGAATGGGCAATTTGAGAACACGTTTTTGGCTCGCCCTGTTCATCGGGTTGGAGCTCCAGCGAGTACTCCGGTGACGAATTACAGCGAGGATTTAGATTCGGGGAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACTGGAAATGATTAA 861 51.22 MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNSNPPNDSHPPPPPPPPPVLIQPTSADFADSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGANGGAGLVSTASDPATDHLFASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHHQMAAAAAAAQYHRQVAHFGSSPPTNGQFENTFLARPVHRVGAPASTPVTNYSEDLDSGNGTGGRKVLTLFPTGND* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32785961 32786821 - CsaV3_3G039910.1 Csa03g03685 524590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03685 286 SUPERFAMILY Homeodomain-like 86 146 IPR009057 -
Csa03g03685 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 145 IPR017930 -
Csa03g03685 286 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 286 - -
Csa03g03685 286 MobiDBLite consensus disorder prediction 46 63 - -
Csa03g03685 286 Pfam Myb-like DNA-binding domain 93 141 IPR001005 -
Csa03g03685 286 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 286 IPR044841 GO:0003700|GO:0006355
Csa03g03685 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 142 IPR006447 GO:0003677
Csa03g03685 286 MobiDBLite consensus disorder prediction 255 275 - -
Csa03g03685 286 Gene3D - 86 148 - -
Csa03g03685 286 MobiDBLite consensus disorder prediction 1 23 - -
Csa03g03685 286 MobiDBLite consensus disorder prediction 36 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03685 Csa-Chr3:32785961 Csa04g01908 Csa-Chr4:18833199 3.23E-121 dispersed
Csa07g00784 Csa-Chr7:5506453 Csa03g03685 Csa-Chr3:32785961 1.66E-14 dispersed
Csa03g03685 Csa-Chr3:32785961 Csa01g02442 Csa-Chr1:21646512 5.36E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31370 PF00249 Myb_DNA-binding 2.10E-08 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03685 - - csv:101216059 496.893