Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03689 ATGGGATTCTTAGAACGCATTGGCCATTTCTTTCAAAGTGCAAACCCATACATCGCAGTCATCTCCCTCCAATTCGGCTACGCTGGAATGAACATCATCTCCGTCGTTTCCCTCAACCGTGGTATGAGCCACTACGTCCTTGTTGTCTACCGTCATGCCTTTGCCACTGCCGTCATGGCACCCTTTGCTCTTATTCTCGAGAGGAAAGTAAGACCGAAGATCACATTTAAGATTTTCATTCAGATGTTTGCTCTTGCTCTTCTTGGACCACTGATTGATCAAAATTTCTACTACGTGGGGTTGAAAATGACATCCCCAACTTTCTCTTGTGCAATAAGCAACATGCTCCCTTCAATGACATTCGTCATGGCAGTCATTTGCAGGATGGAGAAGTTGGATTTGAAACGAGTGAGATATCAAGCGAAGTTGTTTGGAACGATAGTGACGGTGGTGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAACTTCTTCTCGACCGGGCACGGCCACCAACCGTCTACAGCCGACGCAGCTGCGGTTAACCACCACAACGACGGAGAGTTCGTCAAAGGCTCCATATTGCTCATCATCGCCACTCTGGCTTGGGCAGCCTTCTTCATTCTCCAAGTAATAACCTTGAGAAAATACACCGCTCATCTTTCTCTCACTACCTTGGTTTGCTTTTTGGGAACCCTTCAAGCCATTGTCGTTACCCTCGCCTTGGAACACCGTCCTGGCGCCTGGGCCATCGGCTGGGACATGAACCTTCTTGCCGCTGCATATGCGGGGATTGTGACATCAGGGGTGGCATATTATGTTCAAGGTTTGGTTATGAAGACAAAAGGGCCAGTTTTTGTTACAGCTTTTAGTCCATTGATGATGGTTATTGTTGCTTTCATGGGATCTTTCATCTTGGCTGAAAAGATTTATGTTGGAGGGATAATTGGAGCAGTGTTGATTGTAATAGGATTATACTCTGTTTTGTGGGGAAAATACAAGGAAAGCAAAGAGAAGGAAAGTAATGGAGATATTGTTGAAGCAATGAAAGGTGGAGATGAATTGCCTATAACAAATGAAGGCATTGAAGAAGCAATTGATCATCAAAAGAAAGAGGGTTTGGCCATTACTATTCCACCCATCGAAGCACTTAACATGGAGAAGAGGCAGCTTCAAGACACTCGCTGA 1194 45.23 MGFLERIGHFFQSANPYIAVISLQFGYAGMNIISVVSLNRGMSHYVLVVYRHAFATAVMAPFALILERKVRPKITFKIFIQMFALALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVICRMEKLDLKRVRYQAKLFGTIVTVVGAMLMTFYKGSVINFFSTGHGHQPSTADAAAVNHHNDGEFVKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTLVCFLGTLQAIVVTLALEHRPGAWAIGWDMNLLAAAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFSPLMMVIVAFMGSFILAEKIYVGGIIGAVLIVIGLYSVLWGKYKESKEKESNGDIVEAMKGGDELPITNEGIEEAIDHQKKEGLAITIPPIEALNMEKRQLQDTR* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32827816 32830681 + CsaV3_3G039950.1 Csa03g03689 524594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03689 397 Coils Coil 383 397 - -
Csa03g03689 397 Pfam EamA-like transporter family 19 157 IPR000620 GO:0016020|GO:0016021
Csa03g03689 397 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020|GO:0016021
Csa03g03689 397 PANTHER WAT1-RELATED PROTEIN 11 367 - -
Csa03g03689 397 PANTHER WAT1-RELATED PROTEIN 11 367 IPR030184 GO:0016021|GO:0022857
Csa03g03689 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Csa03g03689 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00519 Csa-Chr2:3652692 Csa03g03689 Csa-Chr3:32827816 6.76E-74 dispersed
Csa02g00976 Csa-Chr2:9315017 Csa03g03689 Csa-Chr3:32827816 2.20E-78 dispersed
Csa02g02098 Csa-Chr2:19067121 Csa03g03689 Csa-Chr3:32827816 1.13E-80 dispersed
Csa03g03689 Csa-Chr3:32827816 Csa03g03691 Csa-Chr3:32842765 0 dispersed
Csa03g04250 Csa-Chr3:37232371 Csa03g03689 Csa-Chr3:32827816 4.50E-81 dispersed
Csa05g01817 Csa-Chr5:21509536 Csa03g03689 Csa-Chr3:32827816 3.58E-108 dispersed
Csa03g03689 Csa-Chr3:32827816 Csa03g03690 Csa-Chr3:32832894 3.58E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03689 - - csv:101211966 764.992