Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03689 | ATGGGATTCTTAGAACGCATTGGCCATTTCTTTCAAAGTGCAAACCCATACATCGCAGTCATCTCCCTCCAATTCGGCTACGCTGGAATGAACATCATCTCCGTCGTTTCCCTCAACCGTGGTATGAGCCACTACGTCCTTGTTGTCTACCGTCATGCCTTTGCCACTGCCGTCATGGCACCCTTTGCTCTTATTCTCGAGAGGAAAGTAAGACCGAAGATCACATTTAAGATTTTCATTCAGATGTTTGCTCTTGCTCTTCTTGGACCACTGATTGATCAAAATTTCTACTACGTGGGGTTGAAAATGACATCCCCAACTTTCTCTTGTGCAATAAGCAACATGCTCCCTTCAATGACATTCGTCATGGCAGTCATTTGCAGGATGGAGAAGTTGGATTTGAAACGAGTGAGATATCAAGCGAAGTTGTTTGGAACGATAGTGACGGTGGTGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAACTTCTTCTCGACCGGGCACGGCCACCAACCGTCTACAGCCGACGCAGCTGCGGTTAACCACCACAACGACGGAGAGTTCGTCAAAGGCTCCATATTGCTCATCATCGCCACTCTGGCTTGGGCAGCCTTCTTCATTCTCCAAGTAATAACCTTGAGAAAATACACCGCTCATCTTTCTCTCACTACCTTGGTTTGCTTTTTGGGAACCCTTCAAGCCATTGTCGTTACCCTCGCCTTGGAACACCGTCCTGGCGCCTGGGCCATCGGCTGGGACATGAACCTTCTTGCCGCTGCATATGCGGGGATTGTGACATCAGGGGTGGCATATTATGTTCAAGGTTTGGTTATGAAGACAAAAGGGCCAGTTTTTGTTACAGCTTTTAGTCCATTGATGATGGTTATTGTTGCTTTCATGGGATCTTTCATCTTGGCTGAAAAGATTTATGTTGGAGGGATAATTGGAGCAGTGTTGATTGTAATAGGATTATACTCTGTTTTGTGGGGAAAATACAAGGAAAGCAAAGAGAAGGAAAGTAATGGAGATATTGTTGAAGCAATGAAAGGTGGAGATGAATTGCCTATAACAAATGAAGGCATTGAAGAAGCAATTGATCATCAAAAGAAAGAGGGTTTGGCCATTACTATTCCACCCATCGAAGCACTTAACATGGAGAAGAGGCAGCTTCAAGACACTCGCTGA | 1194 | 45.23 | MGFLERIGHFFQSANPYIAVISLQFGYAGMNIISVVSLNRGMSHYVLVVYRHAFATAVMAPFALILERKVRPKITFKIFIQMFALALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVICRMEKLDLKRVRYQAKLFGTIVTVVGAMLMTFYKGSVINFFSTGHGHQPSTADAAAVNHHNDGEFVKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTLVCFLGTLQAIVVTLALEHRPGAWAIGWDMNLLAAAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFSPLMMVIVAFMGSFILAEKIYVGGIIGAVLIVIGLYSVLWGKYKESKEKESNGDIVEAMKGGDELPITNEGIEEAIDHQKKEGLAITIPPIEALNMEKRQLQDTR* | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 32827816 | 32830681 | + | CsaV3_3G039950.1 | Csa03g03689 | 524594 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03689 | 397 | Coils | Coil | 383 | 397 | - | - | |
Csa03g03689 | 397 | Pfam | EamA-like transporter family | 19 | 157 | IPR000620 | GO:0016020|GO:0016021 | |
Csa03g03689 | 397 | Pfam | EamA-like transporter family | 193 | 331 | IPR000620 | GO:0016020|GO:0016021 | |
Csa03g03689 | 397 | PANTHER | WAT1-RELATED PROTEIN | 11 | 367 | - | - | |
Csa03g03689 | 397 | PANTHER | WAT1-RELATED PROTEIN | 11 | 367 | IPR030184 | GO:0016021|GO:0022857 | |
Csa03g03689 | 397 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 50 | 159 | - | - | |
Csa03g03689 | 397 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 232 | 335 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00519 | Csa-Chr2:3652692 | Csa03g03689 | Csa-Chr3:32827816 | 6.76E-74 | dispersed | |
Csa02g00976 | Csa-Chr2:9315017 | Csa03g03689 | Csa-Chr3:32827816 | 2.20E-78 | dispersed | |
Csa02g02098 | Csa-Chr2:19067121 | Csa03g03689 | Csa-Chr3:32827816 | 1.13E-80 | dispersed | |
Csa03g03689 | Csa-Chr3:32827816 | Csa03g03691 | Csa-Chr3:32842765 | 0 | dispersed | |
Csa03g04250 | Csa-Chr3:37232371 | Csa03g03689 | Csa-Chr3:32827816 | 4.50E-81 | dispersed | |
Csa05g01817 | Csa-Chr5:21509536 | Csa03g03689 | Csa-Chr3:32827816 | 3.58E-108 | dispersed | |
Csa03g03689 | Csa-Chr3:32827816 | Csa03g03690 | Csa-Chr3:32832894 | 3.58E-112 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03689 | - | - | csv:101211966 | 764.992 |