Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03692 ATGGGATTATTCTTTGGCCATTTCTTCCAAAATGCAATGCCATACATCGCAGTCATCTTCCTCCAATTCGGCTACGCCGGACTGAACATCCTCTCTGCCATCGCCCTCAGTGGTGGTATCAGTCACTACGTTCTTGTCGTCTACCGTCAGGTCTTTGCTACTGCGATCATGGCGCCCTTTGCTCTCATTCTCGAGAGGAAATTTAGACCAAAGATTACAGTTAAGATTTTCATTCAGATGTTCGTTCTTGCTCTTCTTGGGCCATTGCTTGATCAAAACTTATACTACATGGGGCTAAAATTGACATCTCCAACAATCGCTTGCGCCATAGGCAACATGCTTCCTTCAATGACATTTGCTATGGCAGTCATTTGCAAGATAGAAAAGTTAGATATGAAAAGAGTGGGATGTCGAGCGAAGTTGTTGGGAACAATAGTGACCCTATGTGGAGCCATGTTGATGACATTTTATAAAGGAAGTATCGTCAACTTTCTCGGTACAAAGCACGGCCGCCAACCGAACATACCATCCACGGCCGTGCACAACCACCACAACAAGGGAGAGTACATCAAAGGCTCCATTTTGCTCATCATCTCCGTTTTTGCTTGGGCAGCCTTCTTCGTCCTTCAAGCAATAACCTTGAGAAAATACACAGCTCATCTTTCTCTCACCGCCTTGGTTTGCTTTCTGGGAACCCTTCAGGCTATTGTTGCCACCCTTGCCATGGAGCGTCGCCTTTCCGTGTGGACCATCGGTTGGGATTGGAACCTTCTAGCATCTGCTTATGCGGGAATTGTGACGACAGGGGTGGCATATTATGTTCAAGGTATGGTTATGAAAAGAAGAGGGCCAGTTTTTGTTACAGCTTTTGGTCCTATGGTAGTAGTGATTGTTGCCTTCATGGGTCATTTCATCTTGGCTGAAGAGATTTATGTTGGAGGGATAATTGGAACAGTGGTGATTGTGATAGGGTTATACTTTGTTTTGTGGGGAATGTATAAGGAAAGCAAAGAGAAGAAGGAAGAAGTTAATGGAGAGATTATTGTTGAAGCAATAATAGACGAAGGTATTGAATTAGCAATTGATCAAAAGAAAGAGGGACATTTGGCCATTACTACTATTCCATCCCTTCATGGCTTCACCTAA 1146 44.07 MGLFFGHFFQNAMPYIAVIFLQFGYAGLNILSAIALSGGISHYVLVVYRQVFATAIMAPFALILERKFRPKITVKIFIQMFVLALLGPLLDQNLYYMGLKLTSPTIACAIGNMLPSMTFAMAVICKIEKLDMKRVGCRAKLLGTIVTLCGAMLMTFYKGSIVNFLGTKHGRQPNIPSTAVHNHHNKGEYIKGSILLIISVFAWAAFFVLQAITLRKYTAHLSLTALVCFLGTLQAIVATLAMERRLSVWTIGWDWNLLASAYAGIVTTGVAYYVQGMVMKRRGPVFVTAFGPMVVVIVAFMGHFILAEEIYVGGIIGTVVIVIGLYFVLWGMYKESKEKKEEVNGEIIVEAIIDEGIELAIDQKKEGHLAITTIPSLHGFT* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32850918 32853439 + CsaV3_3G039980.1 Csa03g03692 524597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03692 381 PANTHER WAT1-RELATED PROTEIN 9 362 - -
Csa03g03692 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 157 - -
Csa03g03692 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 235 331 - -
Csa03g03692 381 Pfam EamA-like transporter family 14 155 IPR000620 GO:0016020|GO:0016021
Csa03g03692 381 Pfam EamA-like transporter family 191 329 IPR000620 GO:0016020|GO:0016021
Csa03g03692 381 PANTHER WAT1-RELATED PROTEIN 9 362 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03690 Csa-Chr3:32832894 Csa03g03692 Csa-Chr3:32850918 1.14E-154 dispersed
Csa03g03692 Csa-Chr3:32850918 Csa04g01903 Csa-Chr4:18776633 1.43E-139 dispersed
Csa03g03691 Csa-Chr3:32842765 Csa03g03692 Csa-Chr3:32850918 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03692 - - csv:105435130 728.398