Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03707 ATGGAGATGGAAGTAATGTCCGAAGTGCAGATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCAGACTTAAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGATCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCAAATAGTTCAACCATGAACAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCAAACACTGCCATTACAGAAGGAGTCAAATGCAAATTTGGTTTCTACATCTGGTGGTCCTCGTGAAAACTGGGGAGAGTCCAATATGGCAGACACCAGCACAAGGACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCCGTATATGATTCTAGCAACAAATCGAAAGAAAAAACCGCAGATCAGAAGACCTTACGAAGGCTTGCTCAAAATCGTGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAACTTGAGCAAGAACTCCAGAGAGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCAATGAGTGGGAATGGGGCCCTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATGAATGAGCTTAGAGCTGCAGTTAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCCGAGATCCTAAAGCTTCTTGTAAGCCAATTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATCTGTAACCTACAACAATTATCACAACAAGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAGACATTGGCCAGTGCCACCCCTGCAACGTCAGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCTTACGCCAGGCGGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTAGCAATAAATGACTACTTCTCTCGCCTTAGAGCCCTCAGTTCTCTGTGGCTAGCACGGCCACGAGATTGA 1338 44.47 MEMEVMSEVQMGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLTRNPLYNQIKSNSSTMNNNIQFGSLIKPLASTDVNLPTAVMGSQTLPLQKESNANLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAVYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32935303 32944797 - CsaV3_3G040130.1 Csa03g03707 524612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03707 445 Pfam bZIP transcription factor 159 200 IPR004827 GO:0003700|GO:0006355
Csa03g03707 445 MobiDBLite consensus disorder prediction 122 137 - -
Csa03g03707 445 SUPERFAMILY Leucine zipper domain 160 203 IPR046347 GO:0003700|GO:0006355
Csa03g03707 445 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 43 445 - -
Csa03g03707 445 Pfam Seed dormancy control 243 318 IPR025422 GO:0006351|GO:0043565
Csa03g03707 445 Gene3D - 159 211 - -
Csa03g03707 445 CDD bZIP_HBP1b-like 160 211 - -
Csa03g03707 445 ProSiteProfiles DOG1 domain profile. 225 442 IPR025422 GO:0006351|GO:0043565
Csa03g03707 445 PANTHER TRANSCRIPTION FACTOR TGA9 43 445 - -
Csa03g03707 445 Coils Coil 179 206 - -
Csa03g03707 445 MobiDBLite consensus disorder prediction 87 121 - -
Csa03g03707 445 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 163 178 IPR004827 GO:0003700|GO:0006355
Csa03g03707 445 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 158 202 IPR004827 GO:0003700|GO:0006355
Csa03g03707 445 MobiDBLite consensus disorder prediction 87 161 - -
Csa03g03707 445 SMART brlzneu 156 219 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03598 Csa-Chr3:32084178 Csa03g03707 Csa-Chr3:32935303 6.24E-130 dispersed
Csa03g03707 Csa-Chr3:32935303 Csa05g02868 Csa-Chr5:29012510 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31372 PF14144 DOG1 5.40E-30 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03707 K14431 - csv:101219149 806.979