Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03727 ATGGTTATGGCTGCCGATTCCCAATTCCATGTTCTTGCCGTTGATGATAGCCTCATAGATAGAAAGCTCATCGAAAGGCTTCTCAAAACCTCCTCATATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTTGGTTTGATTCAAGAACATCAACCTACAAACTTCAAATCGTCTTCTAATTCTTCTTTTTCCTCCCCTAATAATCATCATCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTACTCAAGAAAGTTAAGGAATCAACATCGCTAAGAAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCAAGAATCAACAGATGTTTAGAAGAAGGCGCGGAGGAGTTTTTTCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAAGTGAAGGAAGATCAAAATCGAGAAGAAGGAGAAGAAGAATCAAGAACAGAGACCGAATTGAAGTTGGTACAAGAAGAAGAAGGGGAAATTGAGTTTGAGATGATGAGTAAGAAGAGAAAGGGAGGTACGGAAGAAGAAGAAGAAGAAGGTTTGGAGGAGGAGATGAGAAGAAGAAGAAGAAGATACAACAACAATGGCGTCGCAACGGCGATTTGA 681 40.53 MVMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQPTNFKSSSNSSFSSPNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKVKEDQNREEGEEESRTETELKLVQEEEGEIEFEMMSKKRKGGTEEEEEEGLEEEMRRRRRRYNNNGVATAI* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33106666 33108278 + CsaV3_3G040330.1 Csa03g03727 524632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03727 226 MobiDBLite consensus disorder prediction 153 226 - -
Csa03g03727 226 Pfam Response regulator receiver domain 11 141 IPR001789 GO:0000160
Csa03g03727 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 3 217 - -
Csa03g03727 226 SMART REC_2 9 147 IPR001789 GO:0000160
Csa03g03727 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 217 IPR045279 GO:0009736
Csa03g03727 226 CDD REC_typeA_ARR 11 147 - -
Csa03g03727 226 ProSiteProfiles Response regulatory domain profile. 10 152 IPR001789 GO:0000160
Csa03g03727 226 SUPERFAMILY CheY-like 8 164 IPR011006 -
Csa03g03727 226 MobiDBLite consensus disorder prediction 153 200 - -
Csa03g03727 226 Gene3D - 10 224 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03727 Csa04g01951 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03727 Csa-Chr3:33106666 Csa04g01951 Csa-Chr4:19429525 3.57E-80 dispersed
Csa03g03727 Csa-Chr3:33106666 Csa05g02375 Csa-Chr5:25975705 2.47E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31373 PF00072 Response_reg 4.60E-17 CL0304 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03727 K14492 - csv:101220810 377.481