Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03758 ATGGCCGACGCCGACCAACTCCCTCGCCGGAAACCCCTTGGGAATAAGCGTGCCAATAGAGACCCCGACTCCGCCACCGTCACTGCTCCTTGTGGCGCATGCAAGTTTCTCAGGAGAAAATGTGTCAATGGTTGTATCTTTGCGCCACATTTTGCCTCGGATCAGGGTGCTGCACGTTTCGCTGCTGTGCACAAGATCTTTGGAGCTAGCAACGTGTCAAAGCTGCTGCTGCATATTCCGGTCAGCCGTCGAAACGATGCCGTCGTTACTATCTCCTATGAGGCGCAGGCCAGACTGTCCGACCCTGTCTATGGCTGTGTCTCTACTGTTCTTGCCCTACAACAACAGGTAGCATCTCTTCAGGCGGAGCTTGCGGCGGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTGCAGTTCAAAACTCACAGTCATCCCAAGTAGGAGTTCTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGCCTCTACCTCCGCTCCTAATGCAATCAACTTGAGTAGTTTTGCTTCCAATTATGATCTTCCTACCGAGACTGCCCCGTCTTCCCATCACTTAGAGCCTCTTCACTTCCCCCACCGCCCAATCGACGAGGAGGAAGACGAGGAAAACAGCCAGCTGCCAGCTATCTTTGCTGATTAA 669 52.91 MADADQLPRRKPLGNKRANRDPDSATVTAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKIFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQLISSRLAFAAAVQNSQSSQVGVLQPAYSNNSSISASTSAPNAINLSSFASNYDLPTETAPSSHHLEPLHFPHRPIDEEEDEENSQLPAIFAD* 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33323707 33326410 + CsaV3_3G040640.1 Csa03g03758 524663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03758 222 Pfam Lateral organ boundaries (LOB) domain 30 128 IPR004883 -
Csa03g03758 222 Coils Coil 110 130 - -
Csa03g03758 222 MobiDBLite consensus disorder prediction 1 26 - -
Csa03g03758 222 ProSiteProfiles LOB domain profile. 29 131 IPR004883 -
Csa03g03758 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 21 196 - -
Csa03g03758 222 MobiDBLite consensus disorder prediction 1 18 - -
Csa03g03758 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 21 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02259 Csa-Chr3:20013939 Csa03g03758 Csa-Chr3:33323707 2.09E-51 dispersed
Csa03g03758 Csa-Chr3:33323707 Csa06g00614 Csa-Chr6:5189706 2.56E-49 dispersed
Csa03g03758 Csa-Chr3:33323707 Csa06g00613 Csa-Chr6:5177900 8.76E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31376 PF03195 LOB 2.30E-37 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03758 - - csv:101215818 404.445