Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03763 ATGGCTTCTTCGTCTTCTGATCCTGGCTTCAAACACGAACCTGGTGCCTGTAGCACTGCTGCTGCTGGAAGAGGGACGGCGGAATCTTCCGAGGTTGTTATGGCGAATGATCAGCTTTTACTCTATAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCCAAAGAACGCATTAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCTATATACCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGAGCATATGATGAAGAAGAGGCTGCTGCTAGAGCATACGATTTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACCAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGAAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGTCGATGGGATCCTTCATTTGGTCGTATGCCGGGCCCTGATTATGTTAGCAGTATAAATTATGGTGCTGGAGATGATCAAGCAACTGAAAGTGAATTTGTCCACAACTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCAAACAAATCTCGAACGGCCAGTGCAGGCTCAAAGTCATCAGAAGAAGACAAAAATAGTTGTGTTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCACCCGTCCTACAGAGCCATATGAGATGCCCTGTTTGGGTGCTTCTGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGTATTTTGTCACGGTCAGCAGCCTACAAAAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAACTAACAACGAGAACGATGAGAACGAAAATAAAAACACTGTTAACAAGATAGATCACGGGAAAGTGGTTGAAACACCTACCACAAGTCATGGTGGTGGTGATCCCAGTGAGAGATATGGGGTTACTTTTGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACCGTTGAACCTTTGGGAGATCCTATTCATTGGACATCTCTTGTTTCTGTTCTTCCTACCGGACTTTCTCGCACAGCTGAGGTTACGAAAACTGAAACCTCTTCAACTTACACTTTGTTTCGGCCTGAGGAATAA 1299 44.5 MASSSSDPGFKHEPGACSTAAAGRGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWDPSFGRMPGPDYVSSINYGAGDDQATESEFVHNFCIERKIDLTSHIKWWGPNKSRTASAGSKSSEEDKNSCVGEVGSELKALGQTTRPTEPYEMPCLGASGVKKAASKVSALSILSRSAAYKSLQEKALKLQETNNENDENENKNTVNKIDHGKVVETPTTSHGGGDPSERYGVTFGTSGGLPLQRNMFPLTPFLTAPLLSSYNTVEPLGDPIHWTSLVSVLPTGLSRTAEVTKTETSSTYTLFRPEE* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33363920 33369380 + CsaV3_3G040690.1 Csa03g03763 524668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03763 432 MobiDBLite consensus disorder prediction 316 356 - -
Csa03g03763 432 PANTHER BNAA03G19580D PROTEIN 20 430 - -
Csa03g03763 432 SUPERFAMILY DNA-binding domain 73 141 IPR016177 GO:0003677
Csa03g03763 432 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Csa03g03763 432 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Csa03g03763 432 Pfam AP2 domain 74 132 IPR001471 GO:0003700|GO:0006355
Csa03g03763 432 MobiDBLite consensus disorder prediction 1 23 - -
Csa03g03763 432 ProSiteProfiles AP2/ERF domain profile. 74 140 IPR001471 GO:0003700|GO:0006355
Csa03g03763 432 MobiDBLite consensus disorder prediction 316 335 - -
Csa03g03763 432 SMART rav1_2 74 146 IPR001471 GO:0003700|GO:0006355
Csa03g03763 432 Gene3D AP2/ERF domain 74 142 IPR036955 GO:0003700|GO:0006355
Csa03g03763 432 MobiDBLite consensus disorder prediction 237 256 - -
Csa03g03763 432 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 20 430 - -
Csa03g03763 432 Coils Coil 305 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03763 Csa-Chr3:33363920 Csa05g02684 Csa-Chr5:27738310 1.56E-59 dispersed
Csa03g03763 Csa-Chr3:33363920 Csa06g03048 Csa-Chr6:26200005 2.32E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31378 PF00847 AP2 3.50E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03763 K09285 - csv:101206434 845.114