Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03763 | ATGGCTTCTTCGTCTTCTGATCCTGGCTTCAAACACGAACCTGGTGCCTGTAGCACTGCTGCTGCTGGAAGAGGGACGGCGGAATCTTCCGAGGTTGTTATGGCGAATGATCAGCTTTTACTCTATAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCCAAAGAACGCATTAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCTATATACCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGAGCATATGATGAAGAAGAGGCTGCTGCTAGAGCATACGATTTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACCAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGAAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGTCGATGGGATCCTTCATTTGGTCGTATGCCGGGCCCTGATTATGTTAGCAGTATAAATTATGGTGCTGGAGATGATCAAGCAACTGAAAGTGAATTTGTCCACAACTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCAAACAAATCTCGAACGGCCAGTGCAGGCTCAAAGTCATCAGAAGAAGACAAAAATAGTTGTGTTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCACCCGTCCTACAGAGCCATATGAGATGCCCTGTTTGGGTGCTTCTGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGTATTTTGTCACGGTCAGCAGCCTACAAAAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAACTAACAACGAGAACGATGAGAACGAAAATAAAAACACTGTTAACAAGATAGATCACGGGAAAGTGGTTGAAACACCTACCACAAGTCATGGTGGTGGTGATCCCAGTGAGAGATATGGGGTTACTTTTGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACCGTTGAACCTTTGGGAGATCCTATTCATTGGACATCTCTTGTTTCTGTTCTTCCTACCGGACTTTCTCGCACAGCTGAGGTTACGAAAACTGAAACCTCTTCAACTTACACTTTGTTTCGGCCTGAGGAATAA | 1299 | 44.5 | MASSSSDPGFKHEPGACSTAAAGRGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWDPSFGRMPGPDYVSSINYGAGDDQATESEFVHNFCIERKIDLTSHIKWWGPNKSRTASAGSKSSEEDKNSCVGEVGSELKALGQTTRPTEPYEMPCLGASGVKKAASKVSALSILSRSAAYKSLQEKALKLQETNNENDENENKNTVNKIDHGKVVETPTTSHGGGDPSERYGVTFGTSGGLPLQRNMFPLTPFLTAPLLSSYNTVEPLGDPIHWTSLVSVLPTGLSRTAEVTKTETSSTYTLFRPEE* | 433 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 33363920 | 33369380 | + | CsaV3_3G040690.1 | Csa03g03763 | 524668 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03763 | 432 | MobiDBLite | consensus disorder prediction | 316 | 356 | - | - | |
Csa03g03763 | 432 | PANTHER | BNAA03G19580D PROTEIN | 20 | 430 | - | - | |
Csa03g03763 | 432 | SUPERFAMILY | DNA-binding domain | 73 | 141 | IPR016177 | GO:0003677 | |
Csa03g03763 | 432 | PRINTS | Ethylene responsive element binding protein signature | 75 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g03763 | 432 | PRINTS | Ethylene responsive element binding protein signature | 122 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g03763 | 432 | Pfam | AP2 domain | 74 | 132 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g03763 | 432 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Csa03g03763 | 432 | ProSiteProfiles | AP2/ERF domain profile. | 74 | 140 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g03763 | 432 | MobiDBLite | consensus disorder prediction | 316 | 335 | - | - | |
Csa03g03763 | 432 | SMART | rav1_2 | 74 | 146 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g03763 | 432 | Gene3D | AP2/ERF domain | 74 | 142 | IPR036955 | GO:0003700|GO:0006355 | |
Csa03g03763 | 432 | MobiDBLite | consensus disorder prediction | 237 | 256 | - | - | |
Csa03g03763 | 432 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 20 | 430 | - | - | |
Csa03g03763 | 432 | Coils | Coil | 305 | 333 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03763 | Csa-Chr3:33363920 | Csa05g02684 | Csa-Chr5:27738310 | 1.56E-59 | dispersed | |
Csa03g03763 | Csa-Chr3:33363920 | Csa06g03048 | Csa-Chr6:26200005 | 2.32E-10 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31378 | PF00847 | AP2 | 3.50E-14 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03763 | K09285 | - | csv:101206434 | 845.114 |