Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03769 ATGGAGCAGTATCTTCTGAAAGACTTCGAAGTCGAGCCAAAACGTCCTTCAGAGGCAACCTTGAGGAGATGGCGATCTGCCGTCACAATCGTCAGAAATCGCCGACGGAGGTTCCGAAACACTGCAGATCTCGAGAAACGCTCCGAGGCTGAGAAGAAGAAACTCAAAATCCAGGAAAAAATTCGAGTTGCTCTTTATGTTCACAAGGCAGCATTACAGTTTATCGATGTCGTGAATCGGGATGAGTACCATCTGTCAGATGAGGCTAGGAATGTTGGCTTTAGTATCCATCCAGATGAGCTTGCATCCATTGTCCGTAGCCATGATTACAAGGCATTGAAATTTTATGGTGGTGTGGAAGGACTTTCAAGGAAAGTTTCTGTCTCACTAGATGCAGGTGTCAGTGAAAAGGATACGTCCAAGAGACAAGAGATTTATGGTTATAATCGTTACACAGAGAAACCTTCCAGACCGTTTTGGATGTTTGTCTGGGAAGCATTACACGACGTGACATTAATCATCCTAATATTTTGTGCACTAATTTCTTTAGGCGTTGGAATTGCCACAGAAGGATGGCCGAAGGGAACCTATGATGGTTTAGGAATTCTACTCAGTATACTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTTAAGGATCTTGACAAGGAGAAGAAAAAAATTTATGTTGATGTCACTAGGGATGGGCTGAGGAAAAAAGTTTTGATTTACGACTTGGTTGTTGGAGACATTGTTCATCTATCCATTGGAGATCAGGTTCCCGCTGATGGGGTTTTCATATCAGGATATAGTCTACTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAAAAAAGATGAAGAGAAACCATTTCTTCTATCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGTATGAAAACTGAATGGGGAAAGTTGATGGAAACTCTCAGTGAGGGAGGAGAAGATGAGACTCCATTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGATTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTTGGGGAAAAAGCTGCTCACCGTCAATTTACAAAGTGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCTGTTGCAGTTACCATAATAGTTGTTGCAGTTCCTGAGGGTTTACCACTGGCAGTGACATTAAGCCTTGCCTTTGCTATGAAGAAACTGATGGATGAAAGAGCACTAGTTAGGCATCTGTCTGCATGTGAAACAATGGGTTCAACCACTTGCATTTGCACAGATAAAACCGGGACATTAACCACAAACCATATGATAGTTAGCCGTGCATGGGTATGTGAAAATTTTATGGAGAATAAAGACCATGGAAGTGTAGACAAATTGAAATCAGAGATCTCTGAAGACGTTTTAGGCATATTATTGCAGTCCATATTTCAAAATACTAGCTGCGAAGTGACTAAAGATAAGGATGGGAAGAACTCAATCGTTGGTGGAACACCAACAGAATCAGCACTATTAGAGTTTGGCATCCATTTGGGTGGGGATTTTCGTGCCCAACGTACAGAATATAAGATACTTCAAGTAGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCGCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACACATATATAGATTCCAATGGAGAATCTATTGATTTAAAAGAAGAGAAGGTAAATAATGCTACAAATGTTATCAATAGTTTTGCCAATGAAGCTTTGAGGACACTTTGCTTGGCCTTCAAAGATATAGGGGACTCTAGCGGTAAAACTATTCCAGATGATGGATATACATTAGTTGCAATTGTTGGGATCAAGGATCCTGTACGCCCAGGTGTCAAGGAAGCCGTTAAATCTTGCTTAGCTGCTGGAATAACTGTGCGTATGGTCACTGGTGACAATATTAATACAGCGAAGGCTATTGCTAAAGAATGTGGTATACTAACTGATGATGGTTTAGCTATAGAAGGACCAAACTTCCGTAATTTATCTCCAGAACAGATGAAGCAAATTTTACCAGAAGTCCAGGTGATGGCTCGATCCTTGCCACTGGACAAATACACGTTGGTTAACAATTTGCGGAGTATGGGCGAGGTCGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCATTGCATGAGTCAGATATTGGACTAGCTATGGGAATTGCTGGGACTGAGGTGGCCAAAGAAAATGCCGATGTCATCATAATGGATGACAATTTTTCAACAATTGTAAATGTTGCGAGATGGGGGCGTGCGGTGTACATTAACATACAAAAGTTTGTTCAGTTTCAGCTAACCGTTAACATTGTTGCTCTAGTGATCAATTTTGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTACAGTTGCTTTGGGTGAACTTGATTATGGATACTCTTGGTGCTTTGGCACTGGCCACAGAGCCTCCAAATGATGGACTTATGCAGAGACCTCCAATTCCGAAGGGGGTTAACTTTATTACCAAAGCCATGTGGAGGAACATTTTTGGTCAGAGTATATATCAACTTGCTGTTCTTGCTATTCTTAATTTTGGGGGAAAGCAACTTCTTGGACTTGATGGATCTGATTCCACCATAGTTCTAAACACTTTGATTTTCAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATTAACAGCCGTGAGATAGAAAAGATCAACATATTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGTGTCCACAGTGGGGTTTCAAATAATAATTATAGAATTTCTGGGAGCTTTTGCAAGCACTGTACCACTGAGCCGGGAACTGTGGGGACTGAGTGTGCTGATTGGATTTGTGAGCATGCCAGTTGCAGTTGTGTTGAAGCTCATCCCTGTTAGTAAAGAAGAAGCATTCACAGCTCATCATGATGGCTATGAACCAATCCCTTCTGGCCTAGAGCAGGCTTGA 3105 41.61 MEQYLLKDFEVEPKRPSEATLRRWRSAVTIVRNRRRRFRNTADLEKRSEAEKKKLKIQEKIRVALYVHKAALQFIDVVNRDEYHLSDEARNVGFSIHPDELASIVRSHDYKALKFYGGVEGLSRKVSVSLDAGVSEKDTSKRQEIYGYNRYTEKPSRPFWMFVWEALHDVTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDKEKKKIYVDVTRDGLRKKVLIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVKKDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLGEKAAHRQFTKWTSSDALKLLDFFAVAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDERALVRHLSACETMGSTTCICTDKTGTLTTNHMIVSRAWVCENFMENKDHGSVDKLKSEISEDVLGILLQSIFQNTSCEVTKDKDGKNSIVGGTPTESALLEFGIHLGGDFRAQRTEYKILQVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDTYIDSNGESIDLKEEKVNNATNVINSFANEALRTLCLAFKDIGDSSGKTIPDDGYTLVAIVGIKDPVRPGVKEAVKSCLAAGITVRMVTGDNINTAKAIAKECGILTDDGLAIEGPNFRNLSPEQMKQILPEVQVMARSLPLDKYTLVNNLRSMGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVNFITKAMWRNIFGQSIYQLAVLAILNFGGKQLLGLDGSDSTIVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFLGVMVSTVGFQIIIIEFLGAFASTVPLSRELWGLSVLIGFVSMPVAVVLKLIPVSKEEAFTAHHDGYEPIPSGLEQA* 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33403928 33415629 + CsaV3_3G040750.1 Csa03g03769 524674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03769 1034 CDD P-type_ATPase_Ca_PMCA-like 140 883 - -
Csa03g03769 1034 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Csa03g03769 1034 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1018 - -
Csa03g03769 1034 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g03769 1034 PRINTS H+-transporting ATPase (proton pump) signature 750 766 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g03769 1034 PRINTS H+-transporting ATPase (proton pump) signature 782 807 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g03769 1034 Gene3D - 133 333 - -
Csa03g03769 1034 Gene3D - 165 1009 - -
Csa03g03769 1034 Gene3D - 447 795 IPR023214 -
Csa03g03769 1034 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Csa03g03769 1034 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Csa03g03769 1034 PRINTS P-type cation-transporting ATPase superfamily signature 648 659 - -
Csa03g03769 1034 PRINTS P-type cation-transporting ATPase superfamily signature 670 680 - -
Csa03g03769 1034 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Csa03g03769 1034 PRINTS P-type cation-transporting ATPase superfamily signature 774 786 - -
Csa03g03769 1034 Pfam E1-E2 ATPase 233 428 - -
Csa03g03769 1034 Gene3D - 16 77 - -
Csa03g03769 1034 Coils Coil 599 619 - -
Csa03g03769 1034 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1011 IPR023298 -
Csa03g03769 1034 Pfam Cation transporter/ATPase, N-terminus 117 182 IPR004014 -
Csa03g03769 1034 PANTHER CATION TRANSPORTING ATPASE 3 1018 - -
Csa03g03769 1034 Pfam Cation transporting ATPase, C-terminus 835 1009 IPR006068 -
Csa03g03769 1034 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 660 IPR023299 GO:0000166
Csa03g03769 1034 SFLD C1.7: P-type atpase like 432 802 - -
Csa03g03769 1034 Pfam Cation transport ATPase (P-type) 506 590 - -
Csa03g03769 1034 SUPERFAMILY HAD-like 449 855 IPR036412 -
Csa03g03769 1034 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Csa03g03769 1034 SMART Cation_ATPase_N_a_2 118 187 IPR004014 -
Csa03g03769 1034 SFLD p-type atpase 432 802 IPR044492 -
Csa03g03769 1034 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 109 1011 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Csa03g03769 1034 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Csa03g03769 1034 Gene3D - 460 655 IPR023299 GO:0000166
Csa03g03769 1034 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 715 838 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g03769 1034 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 548 696 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa03g03769 1034 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 202 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03769 Csa-Chr3:33403928 Csa05g01391 Csa-Chr5:14841551 0 dispersed
Csa06g03896 Csa-Chr6:30800528 Csa03g03769 Csa-Chr3:33403928 1.42E-27 dispersed
Csa03g03769 Csa-Chr3:33403928 Csa06g03028 Csa-Chr6:26063517 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03769 K01537 - csv:101206199 1981.07