Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03793 ATGGAAGTTCTAAGAACAAGGGTCGGTGGCAGTGGGCTTCTGGTGGCCGTTGCGGCAGTGGTGATACTGCTGGCGGCGGTGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGAATACTAATGTGAACTATACTACCTGGGCTCAGGGAAAGCACTTCTATTATGATGATTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGACTATGAGAATTGCATTTCTGATCATCCACTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGGCCTTATTACTTCATAAGTGGAAAAGGCTTTTGCTTTGGAGGCATGAAGCTTGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCATCCTCACCCTTGAACGAAAAGAGCAGTGCTCTTAGATCTACCAACACTGGACACACCCCATTCGTTCTAACCGCTGTTTTCGCCATTGCTGCTGTACTTGAAGTTTTCACTCGGGTCTGGTAG 540 48.7 MEVLRTRVGGSGLLVAVAAVVILLAAVPEVSATRWTVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCISDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCFGGMKLAIHVEHLPPPPSSSPLNEKSSALRSTNTGHTPFVLTAVFAIAAVLEVFTRVW* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33546451 33548564 - CsaV3_3G040990.1 Csa03g03793 524698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03793 179 Pfam Plastocyanin-like domain 43 124 IPR003245 GO:0009055
Csa03g03793 179 PANTHER LAMIN-LIKE PROTEIN 13 171 - -
Csa03g03793 179 SUPERFAMILY Cupredoxins 32 131 IPR008972 -
Csa03g03793 179 ProSiteProfiles Phytocyanin domain profile. 33 133 IPR003245 GO:0009055
Csa03g03793 179 Gene3D - 31 134 IPR008972 -
Csa03g03793 179 PANTHER BLUE COPPER PROTEIN 13 171 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03793 - - - csv:101210415 337.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02969 Csa-Chr3:28246510 Csa03g03793 Csa-Chr3:33546451 1.24E-26 dispersed
Csa03g03793 Csa-Chr3:33546451 Csa05g00354 Csa-Chr5:2254983 6.13E-23 dispersed
Csa03g03792 Csa-Chr3:33542192 Csa03g03793 Csa-Chr3:33546451 1.12E-30 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1593 . . Bda01g01224 . Bpe02g01443 Bpe14g00162 . . . Cmo11g01201 . . Car11g00976 Car14g00951 . . . . . . . . . . Cla10g01479 Cam10g1524 Cec10g1562 Cco10g1540 Clacu10g1537 Cmu10g2301 Cre10g1684 . . . Cone16ag0481 . . . . Blo17g00375 Blo18g00400 . . . . . . . . . . . . . Cpe04g00182 . . . . . . . . . . . . . . . . Csa03g03793 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02432 . 1 171 Phytocyanin Superfamily AT2G25060 53.5 8.1e-47 183.7
Csa03g03793 . 13 180 Phytocyanin Superfamily AT5G15350 54.4 5.7e-50 194.1
Csa02g02432 . 1 173 Phytocyanin Superfamily AT4G31840 51.1 4.3e-45 177.9
Csa02g02432 . 1 171 Phytocyanin Superfamily AT2G25060 53.5 8.1e-47 183.7
Csa02g02432 . 1 173 Phytocyanin Superfamily AT4G31840 51.1 4.3e-45 177.9
Csa03g03793 . 13 180 Phytocyanin Superfamily AT5G15350 54.4 5.7e-50 194.1
Csa06g02492 . 13 217 Phytocyanin Superfamily AT1G08500 57.1 5.0e-62 234.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38