Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03793 ATGGAAGTTCTAAGAACAAGGGTCGGTGGCAGTGGGCTTCTGGTGGCCGTTGCGGCAGTGGTGATACTGCTGGCGGCGGTGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGAATACTAATGTGAACTATACTACCTGGGCTCAGGGAAAGCACTTCTATTATGATGATTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGACTATGAGAATTGCATTTCTGATCATCCACTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGGCCTTATTACTTCATAAGTGGAAAAGGCTTTTGCTTTGGAGGCATGAAGCTTGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCATCCTCACCCTTGAACGAAAAGAGCAGTGCTCTTAGATCTACCAACACTGGACACACCCCATTCGTTCTAACCGCTGTTTTCGCCATTGCTGCTGTACTTGAAGTTTTCACTCGGGTCTGGTAG 540 48.7 MEVLRTRVGGSGLLVAVAAVVILLAAVPEVSATRWTVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCISDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCFGGMKLAIHVEHLPPPPSSSPLNEKSSALRSTNTGHTPFVLTAVFAIAAVLEVFTRVW* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33546451 33548564 - CsaV3_3G040990.1 Csa03g03793 524698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03793 179 Pfam Plastocyanin-like domain 43 124 IPR003245 GO:0009055
Csa03g03793 179 PANTHER LAMIN-LIKE PROTEIN 13 171 - -
Csa03g03793 179 SUPERFAMILY Cupredoxins 32 131 IPR008972 -
Csa03g03793 179 ProSiteProfiles Phytocyanin domain profile. 33 133 IPR003245 GO:0009055
Csa03g03793 179 Gene3D - 31 134 IPR008972 -
Csa03g03793 179 PANTHER BLUE COPPER PROTEIN 13 171 IPR039391 GO:0009055
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02969 Csa-Chr3:28246510 Csa03g03793 Csa-Chr3:33546451 1.24E-26 dispersed
Csa03g03793 Csa-Chr3:33546451 Csa05g00354 Csa-Chr5:2254983 6.13E-23 dispersed
Csa03g03792 Csa-Chr3:33542192 Csa03g03793 Csa-Chr3:33546451 1.12E-30 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03793 - - csv:101210415 337.421