Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03801 ATGGCGACCTCAAAACCCCAAAGGTCACCTGAGGAGGTCGAAGATATCATCCTTCGTAAAGTCTTCTTAATTTCTCTCACAGATACCTCCGATTCTGATTCCAGAATCGTCTATCTCGAGCAAACCGCCGCCGAACTTCTTAGCGAAGGCAAACCATTGAGGATTTCAAGAGATGTAATGGAGCGCATCATAATCGATCGTCTTTCTGCCCATGTCCCCTCCGCCGAACCCCCTTTTCAGTACCTAATTGGGTGCTACCGTCGAGCTCACGACGAGACTAAGAAAATCGCTTCCATGAAGGATAAGACTTTGCGCTCTGATATGGAAATTGCTCTTAAGCAGGCCAAGAAGTTGACGATTTCGTATTGTAGGATTCATTTAGGCAATCCTGAATTGTTTTCTTCCGGTGCCGATTTAGGTACTAACTCCAACACTTCGCCTTTGCTTCCTTTGATTTTCTCTGAGGTCGGTGGGAGCTCCATGGATGGATTTGGGGCTAGTACTAGTGTTGGTGGAGCCTATCAGTGCCCTCCGGGTTTCCTGGAGGAGTTTCTCCGTGACTCGGATTTTGATACGTTAGAACCCATTTTGAAGGGGTTGTATGAGGATTTAAGGGGTAGTGTCCTTAAAGTTTCTGCTCTTGGGAACTTCCAGCAGCCCTTAAGAGCACTTAGGTTTCTGGTCAGCTTTCCTGTCGGTGCTAAATCTCTTGTGAATCACCCTTGGTGGATTCCTACTGGTAAATATTCCAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGCCAGCAGTGCTTTTCAGAAGCATCAACTCGTAGACCAGCTGATTTACTATCTTCATTCACTACAATTAAAACAGTCATGAATAACTTATATGATGGCCTTTCGGAAGTTCTTCTCTCCCTTCTTAAGAACACAGAGACCCGTGAAAATGTTCTTGAGTATCTGGCAGAGGTGATAAATAGAAACTCATCAAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCGGGCATGTTTGTTAATCTCAGTGCCATCATGCTACGTCTTTGTGAGCCTTTTCTAGATGCAAACTTGACCAAAAGGGATAAAATTGATCCAAAATATGTATGTTATAGTAACCGATTGGAGTTGAGAGGATTAACTGCTCTACATGCTTCATCTGAAGAAGTTACCGAGTGGATTAATAATGGTACTCAGTTGAGAACTGATAACCCTGGGCAGTCCAGCGACAGTGAAAGTCGCTTGCTACAATCCCAGGAGGCTTCCAGTTCTGGCAGTAATGCTACTATTGGATCTTCTACTGCAAAAGCAAGATCAAGTAGTGATAAAACTAGGTACCCGTTTATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACGCTTAAAGCCATGCAGGGACAAGGCCCTGCCCCACAGCTTGAAATGGATATAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAACTTTGTTATGAAGCTCAAATACTGAGGGATGGGACACTGATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCATCTGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAGCTTGTCCAATGGAATTTGCATCCATGCCAGAACATTTTGTGGAAGATGCTATGGAATTGCTTATATTTGCTTCTCGGATTCCAAAAGCTTTGGATGGCATCAATTTGGATGATTTTATGAACTTCATTATTATGTTCATGGCAAGTCCCGAATATATTAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATTCCTCGTAGAAGTGGTTCATCTGTAACGGCAACACTATTTGAAGGCCACCAACTATCGCTTGAGTATCTTGTTAGGAATCTTTTAAAACTCTATGTAGACATCGAGTTTACTGGATCACATACACAGTTTTATGACAAGTTTAACATCCGTCATAATATTGCCGAACTTCTGGAATACCTTTGGCAGGTTCCTAGTCATCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGTGTTTACCTGAATTTCTTGAACTTCCTAATCAACGATAGCATATATCTTCTTGACGAAAGCCTTAATAAGATTCTTGAACTTAAAGAGCTTGAAGCTGAAATGTCAAATACTGCAGAATGGGAACGGCGACCTGCTCAAGAGAGGCAGGAAAGAACTCGGCTCTTTCACTCCCAAGAAAATATCATCCGAATCGATATGAAATTAGCAAATGAGGACGTGAGTATGCTGGCATTTACTTCAGAGCAAATCACAGCTCCTTTCCTACTTCCAGAGATGGTTGAAAGGGTGGCCAGCATGCTTAATTATTTTCTCTTGCAACTTGTTGGTCCTCAGCGAAAATCTCTTAGTCTGAAAGACCCTGAAAAGTATGAATTCCGTCCAAGAGAATTGCTTAAGCAGATTGTTCAAATATATGTTCATCTGGCAAGAGGGGATACGGAGAATATTTTCCCAGCTGCCATTTCGAAGGACGGCCGATCGTACAACGAGCAGTTGTTCACTGCTGCAGCAGATGTACTTATTAGACGTATTAGAGAAGATAGTAGGATAATACAGGAGTTTACTGATCTTGGTAACAAAGCCAAAGATGCAGCTTCTGAGGCAATGGATGCTGAAGCTACTCTAGGAGATATACCCGACGAATTCCTCGACCCAATCCAATACACTTTAATGAAGGACCCTGTGATCTTACCTTCTTCGAGGATCACCGTCGACAGACCCGTCATTCAAAGACATCTCCTCAGCGACAGTACCGACCCATTCAACCGGTCTCATCTGACCGCGGACATGCTAATACCAAATGAAGAACTGAAAGCAAGAATCAAAGAATTTATTAGGTCACAAGAACTGAAGAAGCAACTAGATGGAGGGGTTGCAATGCAGAGCAGCAAGGCAACCATTCAACCCACAAGTGGAGAAATGTTGATTGATTAA 3132 42.98 MATSKPQRSPEEVEDIILRKVFLISLTDTSDSDSRIVYLEQTAAELLSEGKPLRISRDVMERIIIDRLSAHVPSAEPPFQYLIGCYRRAHDETKKIASMKDKTLRSDMEIALKQAKKLTISYCRIHLGNPELFSSGADLGTNSNTSPLLPLIFSEVGGSSMDGFGASTSVGGAYQCPPGFLEEFLRDSDFDTLEPILKGLYEDLRGSVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMNNLYDGLSEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYSNRLELRGLTALHASSEEVTEWINNGTQLRTDNPGQSSDSESRLLQSQEASSSGSNATIGSSTAKARSSSDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEMDIARLEKEIELYSQEKLCYEAQILRDGTLIQQALTFYRLMVIWLVGLVGGFKMPLPSACPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPRELLKQIVQIYVHLARGDTENIFPAAISKDGRSYNEQLFTAAADVLIRRIREDSRIIQEFTDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPNEELKARIKEFIRSQELKKQLDGGVAMQSSKATIQPTSGEMLID* 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33580380 33589752 + CsaV3_3G041070.1 Csa03g03801 524706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03801 1043 Coils Coil 521 548 - -
Csa03g03801 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 943 1021 IPR013083 -
Csa03g03801 1043 MobiDBLite consensus disorder prediction 422 460 - -
Csa03g03801 1043 PANTHER UBIQUITINATION FACTOR E4 1 1021 IPR045132 GO:0000151|GO:0030433|GO:0034450
Csa03g03801 1043 SUPERFAMILY RING/U-box 936 1014 - -
Csa03g03801 1043 ProSiteProfiles U-box domain profile. 943 1017 IPR003613 GO:0004842|GO:0016567
Csa03g03801 1043 SMART Ubox_2 947 1010 IPR003613 GO:0004842|GO:0016567
Csa03g03801 1043 Pfam U-box domain 944 1014 IPR003613 GO:0004842|GO:0016567
Csa03g03801 1043 Pfam Ubiquitin elongating factor core 261 927 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Csa03g03801 1043 PANTHER - 1 1021 - -
Csa03g03801 1043 CDD RING-Ubox_UBE4A 946 1014 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03801 K10597 - csv:101211398 2038.08