Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03804 ATGGGGATTAAATTTTCAAAGCCAAATCAGGTGAAGGTGGACAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGTAACTTGGTATCTAAGCAAAGGAGACGCATGCTTGTTGCTGGATACGATCTTGACATGTCATACATCACTGATCATGTATTGGCAATGTCATTTCCTGCGGAACGGATGCGCGCAGTGTATCGTAATCCCCTATGGCAGGTTAAGTCTGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGCGTGGAGTCATTTCCTTTCGACGATAATCATGTTCCACATCTACAGATGATCAAAATCTTCTGTGACAATGTCTCTTCATGGTTATCATCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTATGTGCCTATTTGGTTTACTGTGGCATGTCAGTGGAGGATGCCCTTCAGCTGTATGCTCAGAGGCGGACAACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTATGTTGGCTACTGGTCAAGGTGCCTTTCCTTTCCCAGGGGAGTTTATAATGGACCTCCCGAGGTGAAGTTGCCCAAACCATGTCGGAGGGAATTGCAAAGAATTCGACTTTATGACGCAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATCGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTGCGGAACTTACCAGGAAATGTTGCAGACAATTTAAGAGTGGATATGAAAGAAGTAATAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCTCATCTTGTTGTTCAAATGGATACTGAGTGTTCCGCACTATACAACAAAACCTGCCTTGACTACAATTTTGAGAAGCCTCTACCACTAACGGGAGATGTGCGCATCATATTCTACGCAAAGATGTTTGGAGGTCGTCTCTTCTATGCATGCTTCAACACAGCATTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCAATTTGTGGTCCTTCCTTCTGCTTGGAGTTAGTATTTGGTCCTGCCAATGCAAAACACTTGTTTTCGACTTCATCGGACGACAATGATGATCCTCAAAGTGATTTGTCTTGA 1251 43.01 MGIKFSKPNQVKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAVYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPHLQMIKIFCDNVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSRCLSFPRGVYNGPPEVKLPKPCRRELQRIRLYDAVNTESIFFVVSESQEVPSQLYRPSAELTRKCCRQFKSGYERSNSPRYFLSFVEGENEGNKSEVEPHLVVQMDTECSALYNKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSICGPSFCLELVFGPANAKHLFSTSSDDNDDPQSDLS* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33600225 33605083 - CsaV3_3G041100.1 Csa03g03804 524709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03804 416 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Csa03g03804 416 Pfam Tyrosine phosphatase family 146 186 IPR026893 GO:0004721
Csa03g03804 416 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 184 IPR000387 GO:0016311|GO:0016791
Csa03g03804 416 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 291 394 IPR035892 -
Csa03g03804 416 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Csa03g03804 416 SMART PTEN_C2_2 223 394 IPR014020 -
Csa03g03804 416 Pfam C2 domain of PTEN tumour-suppressor protein 317 392 IPR014020 -
Csa03g03804 416 Gene3D - 275 397 - -
Csa03g03804 416 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 407 - -
Csa03g03804 416 CDD PTP_PTEN 51 205 IPR045101 GO:0016791
Csa03g03804 416 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Csa03g03804 416 PANTHER BNAC03G16750D PROTEIN 1 407 - -
Csa03g03804 416 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Csa03g03804 416 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03804 Csa-Chr3:33600225 Csa06g02964 Csa-Chr6:25642802 3.81E-43 dispersed
Csa03g03804 Csa-Chr3:33600225 Csa07g00734 Csa-Chr7:5208981 9.64E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03804 K01110 - csv:101212127 862.062