Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03805 ATGCGTCCAATTTTGATGAAAGGCCATGAACGGCCTTTAACTTTCCTCAAGTACAATAGGGATGGCGATCTTCTTTTCTCTTGCGCCAAGGATCATAACCCCACCGTCTGGTACGCCGACAACGGCGAGCGATTGGGGACTTATCGTGGTCATAATGGTGCCGTTTGGTGCTGTGATGTCTCCAGAGATTCAATGCGGCTTATCACTGGAAGTGCTGATCAGACGGCAAAGTTATGGAACGTACAGACTGGACAGCAACTCTTCTCCTTCAATTTCGATTCACCTGCTAGGGCAGTTGATTTTTCTGTCGGTGATAAGCTTGCAGTTATTACCACTGATCCTTTTATGGAGTTGCCTTCTGCTATTCATGTTAAACGCATTGCCAGAGACCCCTCGGAACAGACTGGTGAATCTGTGCTGCTTCTTAAAGGTCCCCAAGGAAGAATCAATAGAGCTGTTTGGGGACCTTTAAATAAGACCATCATAAGTGCAGGAGAAGATGCTGTTGTTCGCATTTGGGATTCTGAGACAGGTAAACTTTTGAAAGAATCAGACAAGGAGATCGGCCATAAGAAAACAGTAACTTCCCTTACGAAATCCTCTGATGGTTCACATTTTATTACTGGTTCTTTGGACAAGTCTGCTAAGCTGTGGGATACTAGAACATTGACGCTTATCAAGACGTATGTGACAGAACGCCCCGTCAATGCAGTTACAATGTCTCCACTTCTTGACCATGTGGTGCTTGGTGGTGGTCAGGATGCTTCAGCTGTGACAACAACTGATCATCGTGCAGGAAAGTTTGAAGCTAAATTTTATGACAAGATCCTTCAAGAAGAGATTGGAGGTGTGAAAGGGCATTTTGGACCCATCAATGCTCTCGCTTTCAATCCCGACGGAAAGAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGACTGCATCATTTCGACCCCGACTACTTCAACATCAAGATTTAA 981 44.75 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFSFNFDSPARAVDFSVGDKLAVITTDPFMELPSAIHVKRIARDPSEQTGESVLLLKGPQGRINRAVWGPLNKTIISAGEDAVVRIWDSETGKLLKESDKEIGHKKTVTSLTKSSDGSHFITGSLDKSAKLWDTRTLTLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33607969 33611876 - CsaV3_3G041110.1 Csa03g03805 524710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03805 326 Pfam WD domain, G-beta repeat 189 219 IPR001680 GO:0005515
Csa03g03805 326 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Csa03g03805 326 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515
Csa03g03805 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Csa03g03805 326 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Csa03g03805 326 SMART WD40_4 222 261 IPR001680 GO:0005515
Csa03g03805 326 SMART WD40_4 1 38 IPR001680 GO:0005515
Csa03g03805 326 SMART WD40_4 135 174 IPR001680 GO:0005515
Csa03g03805 326 SMART WD40_4 41 80 IPR001680 GO:0005515
Csa03g03805 326 SMART WD40_4 177 219 IPR001680 GO:0005515
Csa03g03805 326 SMART WD40_4 277 316 IPR001680 GO:0005515
Csa03g03805 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515
Csa03g03805 326 SUPERFAMILY WD40 repeat-like 4 314 IPR036322 GO:0005515
Csa03g03805 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Csa03g03805 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 314 - -
Csa03g03805 326 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Csa03g03805 326 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Csa03g03805 326 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Csa03g03805 326 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 326 IPR027525 GO:0003743|GO:0005737|GO:0005852
Csa03g03805 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Csa03g03805 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Csa03g03805 326 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Csa03g03805 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Csa03g03805 326 CDD WD40 7 314 - -
Csa03g03805 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Csa03g03805 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Csa03g03805 326 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 326 - -
Csa03g03805 326 Gene3D - 1 326 IPR015943 GO:0005515
Csa03g03805 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02106 Csa-Chr1:18370575 Csa03g03805 Csa-Chr3:33607969 7.21E-42 dispersed
Csa03g03805 Csa-Chr3:33607969 Csa06g03074 Csa-Chr6:26388096 1.52E-07 dispersed
Csa03g03805 Csa-Chr3:33607969 Csa07g01715 Csa-Chr7:17626903 1.54E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03805 K03246 - csv:101211648 669.077