Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03841 | ATGGCGAGACGCAGCGACGATGAAGAAGCCTTTATTGCCTTGGGAAACGAGTGCTCTGATCCTCAACCACCCTTGTTCCGCGACCGATTTGATGAACTTTACCCGCCCGAGTTCTCACGAAAGCTTGTGGCGGAGGTGATCGCTACGTATTTGCTTGTGTTTGTGTCGTGTGGTGTGGCGGCATTGAGTGGGAGTGATGAACCGGTAGTGACGAAGCTTGGAGCTTCAATTACCTGTGGATTGATTGTGACGGTGATGATTTACTCCGTCGGACATATCTCCGGCGCTCATATGAATCCAGCGGTTACTATTGCTTTTGCTGCTGTTCGGCGATTTCCATGGAGACAGGTTCCACTTTATGCAGCAGCTCAATTAAGTGGAGCTACGTCTGCAGCCTTCACACTACGCATATTAATGGATCCAATTCAAGATTTAGGTACTACTTCACCACATGGACCGGCTTTGAAAGCACTTGTTATGGAGATTGTTGTCTCATTTTGTATGATGTTTGTCACTTCTGCGGTTGCCACCGACACCAAAGCTATAGGAGAGCTTGGAGGCGTAGCTGTGGGGTCAGCTGTATGTATCTCGTCCATCTTTGCTGGGCCAATATCGGGTGGATCGATGAACCCAGCAAGATCAATAGGACCAGCCATTGCAAGTTCACGTTACGAAGGAATTTGGGTGTACATGATCGGTCCAGTTACAGGAACCTTGCTTGCATCATTTTCATATAATTTCATACGAGCCACTGAAAAACACACCCATTCACTCTCGTTACATTGA | 786 | 47.71 | MARRSDDEEAFIALGNECSDPQPPLFRDRFDELYPPEFSRKLVAEVIATYLLVFVSCGVAALSGSDEPVVTKLGASITCGLIVTVMIYSVGHISGAHMNPAVTIAFAAVRRFPWRQVPLYAAAQLSGATSAAFTLRILMDPIQDLGTTSPHGPALKALVMEIVVSFCMMFVTSAVATDTKAIGELGGVAVGSAVCISSIFAGPISGGSMNPARSIGPAIASSRYEGIWVYMIGPVTGTLLASFSYNFIRATEKHTHSLSLH* | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 33831117 | 33834624 | + | CsaV3_3G041470.1 | Csa03g03841 | 524746 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03841 | 261 | Gene3D | Glycerol uptake facilitator protein. | 23 | 259 | IPR023271 | - | |
Csa03g03841 | 261 | PRINTS | Major intrinsic protein family signature | 40 | 59 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa03g03841 | 261 | PRINTS | Major intrinsic protein family signature | 79 | 103 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa03g03841 | 261 | PRINTS | Major intrinsic protein family signature | 116 | 135 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa03g03841 | 261 | PRINTS | Major intrinsic protein family signature | 160 | 178 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa03g03841 | 261 | PRINTS | Major intrinsic protein family signature | 191 | 213 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa03g03841 | 261 | PRINTS | Major intrinsic protein family signature | 228 | 248 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa03g03841 | 261 | PANTHER | MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED | 29 | 260 | - | - | |
Csa03g03841 | 261 | Pfam | Major intrinsic protein | 36 | 245 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa03g03841 | 261 | PANTHER | AQUAPORIN NIP2-1 | 29 | 260 | IPR034294 | - | |
Csa03g03841 | 261 | SUPERFAMILY | Aquaporin-like | 32 | 254 | IPR023271 | - | |
Csa03g03841 | 261 | ProSitePatterns | MIP family signature. | 97 | 105 | IPR022357 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03841 | Csa-Chr3:33831117 | Csa06g03729 | Csa-Chr6:29782797 | 3.64E-76 | dispersed | |
Csa03g03840 | Csa-Chr3:33799515 | Csa03g03841 | Csa-Chr3:33831117 | 1.82E-121 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03841 | K09874 | - | csv:101205456 | 511.146 |