Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03841 ATGGCGAGACGCAGCGACGATGAAGAAGCCTTTATTGCCTTGGGAAACGAGTGCTCTGATCCTCAACCACCCTTGTTCCGCGACCGATTTGATGAACTTTACCCGCCCGAGTTCTCACGAAAGCTTGTGGCGGAGGTGATCGCTACGTATTTGCTTGTGTTTGTGTCGTGTGGTGTGGCGGCATTGAGTGGGAGTGATGAACCGGTAGTGACGAAGCTTGGAGCTTCAATTACCTGTGGATTGATTGTGACGGTGATGATTTACTCCGTCGGACATATCTCCGGCGCTCATATGAATCCAGCGGTTACTATTGCTTTTGCTGCTGTTCGGCGATTTCCATGGAGACAGGTTCCACTTTATGCAGCAGCTCAATTAAGTGGAGCTACGTCTGCAGCCTTCACACTACGCATATTAATGGATCCAATTCAAGATTTAGGTACTACTTCACCACATGGACCGGCTTTGAAAGCACTTGTTATGGAGATTGTTGTCTCATTTTGTATGATGTTTGTCACTTCTGCGGTTGCCACCGACACCAAAGCTATAGGAGAGCTTGGAGGCGTAGCTGTGGGGTCAGCTGTATGTATCTCGTCCATCTTTGCTGGGCCAATATCGGGTGGATCGATGAACCCAGCAAGATCAATAGGACCAGCCATTGCAAGTTCACGTTACGAAGGAATTTGGGTGTACATGATCGGTCCAGTTACAGGAACCTTGCTTGCATCATTTTCATATAATTTCATACGAGCCACTGAAAAACACACCCATTCACTCTCGTTACATTGA 786 47.71 MARRSDDEEAFIALGNECSDPQPPLFRDRFDELYPPEFSRKLVAEVIATYLLVFVSCGVAALSGSDEPVVTKLGASITCGLIVTVMIYSVGHISGAHMNPAVTIAFAAVRRFPWRQVPLYAAAQLSGATSAAFTLRILMDPIQDLGTTSPHGPALKALVMEIVVSFCMMFVTSAVATDTKAIGELGGVAVGSAVCISSIFAGPISGGSMNPARSIGPAIASSRYEGIWVYMIGPVTGTLLASFSYNFIRATEKHTHSLSLH* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33831117 33834624 + CsaV3_3G041470.1 Csa03g03841 524746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03841 261 Gene3D Glycerol uptake facilitator protein. 23 259 IPR023271 -
Csa03g03841 261 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03841 261 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03841 261 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03841 261 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03841 261 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03841 261 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03841 261 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 29 260 - -
Csa03g03841 261 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa03g03841 261 PANTHER AQUAPORIN NIP2-1 29 260 IPR034294 -
Csa03g03841 261 SUPERFAMILY Aquaporin-like 32 254 IPR023271 -
Csa03g03841 261 ProSitePatterns MIP family signature. 97 105 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03841 Csa-Chr3:33831117 Csa06g03729 Csa-Chr6:29782797 3.64E-76 dispersed
Csa03g03840 Csa-Chr3:33799515 Csa03g03841 Csa-Chr3:33831117 1.82E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03841 K09874 - csv:101205456 511.146