Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03844 ATGGACCTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGAATCCGAAACACCCATCAAAATCCAACCCACCACCAAATCTCACCCCTTCACCAACGGCGTCCTCAAGCGCCACCACCACACAGCGCCGCCCCCTCCTCAGGTGGTTTACAAAGAATGCCTCAAAAATCACGCCGCCAGTTTAGGCGGCCACGCTCTAGACGGCTGTGGTGAGTTCATGCCATCCCCAACCGCCACCGCCACGGATCCCACCTCCCTCAAATGCGCCGCTTGCGGCTGCCATCGAAATTTCCACCGCCGTGAACCGGATGACCCAATCGCTACTCCAACGACAACCCATGTCATTGAGTACCAACCCCATCACCGTCACCACCCGCCGCCTCCGTCTACGGCGGCGGCGGCCCATCGGAGTCCGAGTTCCGCATCTCCTCCTCCGATCTCCTCATCGTACTACCCTTCCGCACCCCACATGCTTCTAGCCCTCTCCGGTGTGCTGCCGGAGAACGCTGGGGGCGGCGGTGGATTCCACCACACGATTCTGACTCCGAGTCCTAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAGAATGTACGAATTTGCGGAGAAAGTAGGATGGAAGATTCAGAAGCGAGACGAGGATATGATTCAAGAATTCTGCAGCGACGTCGGAGTTGACAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAAAACACCCTCGGGAAAAAAGACGGCGGCCGGAATATGAACGGCAGCGGTGGCGAAGGAGACGGCGACGAGAAAATTAACGGCGGTGGCGAACCACACGCCACAACAAATGGGTCGTCTTCATCATCTTGA 897 56.08 MDLTPAISTAAATISTGGGAVKSPELESETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMPSPTATATDPTSLKCAACGCHRNFHRREPDDPIATPTTTHVIEYQPHHRHHPPPPSTAAAAHRSPSSASPPPISSSYYPSAPHMLLALSGVLPENAGGGGGFHHTILTPSPNSRKRFRTKFTQNQKERMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNMNGSGGEGDGDEKINGGGEPHATTNGSSSSS* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33868099 33870888 + CsaV3_3G041500.1 Csa03g03844 524749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03844 298 MobiDBLite consensus disorder prediction 131 161 - -
Csa03g03844 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 257 IPR006455 -
Csa03g03844 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Csa03g03844 298 MobiDBLite consensus disorder prediction 256 298 - -
Csa03g03844 298 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Csa03g03844 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Csa03g03844 298 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 267 - -
Csa03g03844 298 Gene3D - 193 261 - -
Csa03g03844 298 SUPERFAMILY Homeodomain-like 194 261 IPR009057 -
Csa03g03844 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 267 - -
Csa03g03844 298 MobiDBLite consensus disorder prediction 146 160 - -
Csa03g03844 298 MobiDBLite consensus disorder prediction 30 44 - -
Csa03g03844 298 MobiDBLite consensus disorder prediction 15 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03844 - - - csv:101204974 522.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03844 Csa-Chr3:33868099 Csa05g01927 Csa-Chr5:22469732 2.95E-53 dispersed
Csa01g00741 Csa-Chr1:4706303 Csa03g03844 Csa-Chr3:33868099 1.37E-42 transposed
Csa03g03844 Csa-Chr3:33868099 Csa05g02983 Csa-Chr5:30174070 1.43E-92 wgd
Csa03g03844 Csa-Chr3:33868099 Csa05g02448 Csa-Chr5:26404212 1.93E-59 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g03128 . 37 231 ZF-HD Transcription Factor Family AT4G24660 51.3 1.0e-46 183.7
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT2G02540 52.8 5.4e-51 198.4
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT1G14440 54.1 9.9e-53 204.1
Csa03g03844 . 12 299 ZF-HD Transcription Factor Family AT5G15210 52.7 5.2e-50 194.9
Csa05g02983 . 6 255 ZF-HD Transcription Factor Family AT5G15210 52.0 4.9e-48 188.3
Csa03g03844 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.7 1.3e-60 230.3
Csa05g02983 . 16 257 ZF-HD Transcription Factor Family AT3G28920 62.5 1.7e-57 219.9
Csa03g03844 . 30 263 ZF-HD Transcription Factor Family AT5G39760 64.9 3.2e-49 192.6
Csa05g02983 . 24 261 ZF-HD Transcription Factor Family AT5G39760 57.3 4.2e-49 192.2
Csa05g02983 . 57 258 ZF-HD Transcription Factor Family AT1G69600 51.5 2.8e-47 185.7
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT2G02540 52.8 5.4e-51 198.4
Csa06g03128 . 37 231 ZF-HD Transcription Factor Family AT4G24660 51.3 1.0e-46 183.7
Csa03g03844 . 30 263 ZF-HD Transcription Factor Family AT5G39760 64.9 3.2e-49 192.6
Csa05g02983 . 24 261 ZF-HD Transcription Factor Family AT5G39760 57.3 4.2e-49 192.2
Csa05g02983 . 57 258 ZF-HD Transcription Factor Family AT1G69600 51.5 2.8e-47 185.7
Csa03g03844 . 12 299 ZF-HD Transcription Factor Family AT5G15210 52.7 5.2e-50 194.9
Csa05g02983 . 6 255 ZF-HD Transcription Factor Family AT5G15210 52.0 4.9e-48 188.3
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT1G14440 54.1 9.9e-53 204.1
Csa03g03844 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.7 1.3e-60 230.3
Csa05g02983 . 16 257 ZF-HD Transcription Factor Family AT3G28920 62.5 1.7e-57 219.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31383 PF04770 ZF-HD_dimer 1.90E-29 No_clan Csa TF