Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03844 ATGGACCTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGAATCCGAAACACCCATCAAAATCCAACCCACCACCAAATCTCACCCCTTCACCAACGGCGTCCTCAAGCGCCACCACCACACAGCGCCGCCCCCTCCTCAGGTGGTTTACAAAGAATGCCTCAAAAATCACGCCGCCAGTTTAGGCGGCCACGCTCTAGACGGCTGTGGTGAGTTCATGCCATCCCCAACCGCCACCGCCACGGATCCCACCTCCCTCAAATGCGCCGCTTGCGGCTGCCATCGAAATTTCCACCGCCGTGAACCGGATGACCCAATCGCTACTCCAACGACAACCCATGTCATTGAGTACCAACCCCATCACCGTCACCACCCGCCGCCTCCGTCTACGGCGGCGGCGGCCCATCGGAGTCCGAGTTCCGCATCTCCTCCTCCGATCTCCTCATCGTACTACCCTTCCGCACCCCACATGCTTCTAGCCCTCTCCGGTGTGCTGCCGGAGAACGCTGGGGGCGGCGGTGGATTCCACCACACGATTCTGACTCCGAGTCCTAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAGAATGTACGAATTTGCGGAGAAAGTAGGATGGAAGATTCAGAAGCGAGACGAGGATATGATTCAAGAATTCTGCAGCGACGTCGGAGTTGACAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAAAACACCCTCGGGAAAAAAGACGGCGGCCGGAATATGAACGGCAGCGGTGGCGAAGGAGACGGCGACGAGAAAATTAACGGCGGTGGCGAACCACACGCCACAACAAATGGGTCGTCTTCATCATCTTGA 897 56.08 MDLTPAISTAAATISTGGGAVKSPELESETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMPSPTATATDPTSLKCAACGCHRNFHRREPDDPIATPTTTHVIEYQPHHRHHPPPPSTAAAAHRSPSSASPPPISSSYYPSAPHMLLALSGVLPENAGGGGGFHHTILTPSPNSRKRFRTKFTQNQKERMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNMNGSGGEGDGDEKINGGGEPHATTNGSSSSS* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33868099 33870888 + CsaV3_3G041500.1 Csa03g03844 524749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03844 298 MobiDBLite consensus disorder prediction 131 161 - -
Csa03g03844 298 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 257 IPR006455 -
Csa03g03844 298 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Csa03g03844 298 MobiDBLite consensus disorder prediction 256 298 - -
Csa03g03844 298 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Csa03g03844 298 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Csa03g03844 298 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 267 - -
Csa03g03844 298 Gene3D - 193 261 - -
Csa03g03844 298 SUPERFAMILY Homeodomain-like 194 261 IPR009057 -
Csa03g03844 298 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 267 - -
Csa03g03844 298 MobiDBLite consensus disorder prediction 146 160 - -
Csa03g03844 298 MobiDBLite consensus disorder prediction 30 44 - -
Csa03g03844 298 MobiDBLite consensus disorder prediction 15 59 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03844 Csa-Chr3:33868099 Csa05g01927 Csa-Chr5:22469732 2.95E-53 dispersed
Csa01g00741 Csa-Chr1:4706303 Csa03g03844 Csa-Chr3:33868099 1.37E-42 transposed
Csa03g03844 Csa-Chr3:33868099 Csa05g02983 Csa-Chr5:30174070 1.43E-92 wgd
Csa03g03844 Csa-Chr3:33868099 Csa05g02448 Csa-Chr5:26404212 1.93E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31383 PF04770 ZF-HD_dimer 1.90E-29 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03844 - - csv:101204974 522.316