Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03861 ATGGAGGCGGCAGCTTTGGCACTGAAGAACGAGGATAACCTGAGAATATGTTGGACAGAAGAAGAAGCTCAAACTCAACCCATAAGACGTGTTAAGCGACGTCGGAGAGACCCGGCTGCCGCCACCACCACCGCCGATCAAACTAATAAGCAGCAGTCTCCGAAACAACAGTCCGATCAAGCTCCTACCACCACTATGAAGCGAAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGTCGATTTGAAGCTCATTTGTGGGACAAACTTTCTTGGAATATGACACAGAAGAAGAAGGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTTAAGTACTGGGGTGTAACAACCATCACTAATTTCCCTATATCAGAGTATGAGAAAGAAATCGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCGTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCATAATGGTAGATGGGAAGCAAGAATTGGGAGAGTTTATGGGAACAAATATCTCTATCTTGGAACTTATAGTGAGTAA 612 43.79 MEAAALALKNEDNLRICWTEEEAQTQPIRRVKRRRRDPAAATTTADQTNKQQSPKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSE* 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33997329 33999740 - CsaV3_3G041670.1 Csa03g03861 524766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03861 203 Pfam AP2 domain 70 126 IPR001471 GO:0003700|GO:0006355
Csa03g03861 203 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 8 202 - -
Csa03g03861 203 MobiDBLite consensus disorder prediction 19 75 - -
Csa03g03861 203 MobiDBLite consensus disorder prediction 41 70 - -
Csa03g03861 203 SUPERFAMILY DNA-binding domain 169 202 IPR016177 GO:0003677
Csa03g03861 203 ProSiteProfiles AP2/ERF domain profile. 71 134 IPR001471 GO:0003700|GO:0006355
Csa03g03861 203 ProSiteProfiles AP2/ERF domain profile. 170 203 IPR001471 GO:0003700|GO:0006355
Csa03g03861 203 SMART rav1_2 71 140 IPR001471 GO:0003700|GO:0006355
Csa03g03861 203 Gene3D AP2/ERF domain 169 203 IPR036955 GO:0003700|GO:0006355
Csa03g03861 203 Gene3D AP2/ERF domain 70 136 IPR036955 GO:0003700|GO:0006355
Csa03g03861 203 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 202 - -
Csa03g03861 203 CDD AP2 70 136 IPR001471 GO:0003700|GO:0006355
Csa03g03861 203 SUPERFAMILY DNA-binding domain 70 136 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03861 Csa-Chr3:33997329 Csa05g02684 Csa-Chr5:27738310 5.38E-72 dispersed
Csa06g02245 Csa-Chr6:20178210 Csa03g03861 Csa-Chr3:33997329 2.14E-54 dispersed
Csa03g03861 Csa-Chr3:33997329 Csa06g03048 Csa-Chr6:26200005 2.82E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31385 PF00847 AP2 8.50E-10 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03861 - - csv:101210782 391.734