Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03864 ATGATGACAGGTTGTAAAATTAAAGTTGTGATGGTTTTGGTTTCAATGGCTGTTCTTATGCCAACTCTTAGAGCTGGTATTGCTGAGTTTGATGATTTTTTGCTCCAGAAGTCTGAAGAAGCTAAACAAGCTTCTCTTGAAGCTTTCCACCCTGACCCCATGAATGTCACTGACCATTTCAATCAACATGTTCATCTAGCTTTGGAGGGGATAGAGGGAAGCAATAGCACCAGGAGGAGCCTATCCAAATACAACGGGCCCTGCTTGGCTACAAATCCAATTGATCGTTGCTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAGCTTGCCAAATGTGTGCTTGGTTTCGGCAGAAAAACCACTGGTGGCAAAAAGGGACGTATCTACGTTGTGACTGATCCATCAGATAACGATGTTATTAATCCTAGGCCTGGAACCCTTAGATATGGCGCTCTTCAAAAGAAACCTTTATGGATCATTTTTGCGCGTAGCATGATTATTAGGCTATCCAAGGAGCTGATGATTACTAGCCACAAGACAATCGATGCTCGTGGTGCCAATGTTCACATTGCCTACGGTGCTGGTCTTAGCATTCAATTCGCTCGGAATGTAATCATCCATGGCCTTCGCATCCACCATGTCATCTCAACTGGCGGTGGCATGATCCGCGACACTGCCAACCATGTCGGTCTTCGAACAGTTAGTGATGGAGACGGTATCTCCATCTTTGGATCAACCAACATCTGGCTCGATCATCTCTCCATGTCTAATTGCCAAGATGGACTTATCGACGCAATCCAAGGCTCTACTGCAATCACCATCTCAAACTCTCATTTCACTCATCACAATGATGTGATGCTGTTTGGTGCAAGTGATTCATATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTTGGAAAGGGATTAGTGCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTCGTCAACAATGATTACACTCACTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATTGCCCCACCCAACCCTGCTGCACGACAGATCACAAATAGAAACTATGCAACAGAGAGTGTATGGAAAACATGGACATGGAGATCGGAAGGGGATTTGATGATGAATGGAGCTTATTTCGTTCAGTCCGGGAATCCAAGCAAACGAAGACCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACTTTTGTTAGAAGGCTGACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA 1326 45.78 MMTGCKIKVVMVLVSMAVLMPTLRAGIAEFDDFLLQKSEEAKQASLEAFHPDPMNVTDHFNQHVHLALEGIEGSNSTRRSLSKYNGPCLATNPIDRCWRCDPNWAKNRKKLAKCVLGFGRKTTGGKKGRIYVVTDPSDNDVINPRPGTLRYGALQKKPLWIIFARSMIIRLSKELMITSHKTIDARGANVHIAYGAGLSIQFARNVIIHGLRIHHVISTGGGMIRDTANHVGLRTVSDGDGISIFGSTNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYATESVWKTWTWRSEGDLMMNGAYFVQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34017655 34020037 - CsaV3_3G041700.1 Csa03g03864 524769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03864 441 Pfam Pectate lyase 177 357 IPR002022 -
Csa03g03864 441 Gene3D - 91 434 IPR012334 -
Csa03g03864 441 PANTHER PECTATE LYASE 18-RELATED 7 441 IPR045032 GO:0030570
Csa03g03864 441 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Csa03g03864 441 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Csa03g03864 441 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Csa03g03864 441 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Csa03g03864 441 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Csa03g03864 441 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Csa03g03864 441 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Csa03g03864 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Csa03g03864 441 PANTHER PECTATE LYASE 7 441 - -
Csa03g03864 441 SMART amb_all 166 363 IPR002022 -
Csa03g03864 441 SUPERFAMILY Pectin lyase-like 92 431 IPR011050 -
Csa03g03864 441 Pfam Pectate lyase, N terminus 27 81 IPR007524 GO:0030570
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03864 Csa05g02422 CCT
Csa03g03864 Csa05g02422 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03864 Csa-Chr3:34017655 Csa06g02231 Csa-Chr6:20103120 0 dispersed
Csa01g00790 Csa-Chr1:5004584 Csa03g03864 Csa-Chr3:34017655 0 wgd
Csa03g03864 Csa-Chr3:34017655 Csa05g02422 Csa-Chr5:26233901 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03864 K01728 - csv:101202789 903.664