Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03885 ATGTTCGATTGTGGTGGATACAAGTCGCAGTACATCGGTGGTCACAAGGAGAAATTCGTGAGGTTGGATGATTTGGATTCGAATTTGTCAGTGCCCTCGGGAACAAGCAAAATGAAGAAATGCCGATTCAATCTAGAAGGCCTCCCATTGCCATTCATCAGCAGATCGAAGCCACAAAACGCGTCGAAATCTTTCCGAAGGGGAGTTCAAAGAAGCTCCGACGGAATCATAACTCTAGGTCGATCGCTCCGCTCCGGCGTGTCCAAAGTCATCTTCCCGGAGGATCTTAAAGTATCGGAACAGAAAATCTTCGATCCACAGGACAAATCGCTCCTCTTCTGGAACAAACTATTCGTGTTGTGCTGTATCCTCGCCGTGTCTGTCGATCCGTTGTTCTTCTACCTCCCTGTGTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTCAGCTCGCCGTCACGACCACCACCGTGCGTACGGCTATCGATGTTTTTTACTTGATTCGGATGGGGTTTCAGTTCCGAACGGCTTACATTGCGCCGTCGTCTAGGGTGTTTGGTCGGGGGGAGCTTGTGATTGATCCGACGGAGATAGCCCAGCGGTATCTTCAGCGCTACTTTATAGCTGATTTTCTATCTGTTCTTCCTCTTCCTCAGTTAGTGGTGTGGAGATTTCTTCACAGATCAAAAGGATCAGAAGTTTTGGCAACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCAAGATTTATTAGATTTATACCTTTGAACATAGAGCTTAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTCCTCTTATACATGCTTGCCAGTCATATTGCAGGAGCATTCTGGTACTTGCTTGCAGTGGAGAGGAACGATGCATGTTGGCGGCAAGCATGCAAAAGCAGTGGAAAGTGCAACATTAACTATTTGTATTGTGGGAATAAGCACATGGCTGGGTACAAAGCTTGGAGAAATATAAGCGTTGATGTTCTCACCAAGAAATGCACTGCCTTGGGAGATAATTTGCCTTTCAACTATGGCATTTACACTCAGGCCATTTCCTCTGGCATTGTTCAATCCAGGACTTTCTTCTCCAAGTTCTGCTATTGCTTGTGGTGGGGCTTGCAAAATTTAAGTACACTTGGTCAAGGGCTGCTCACTAGTACTTATCCTGGGGAGGTTATCTTTTCTATTCTAATTGCAATTTCTGGGCTCCTCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTATCTTCAATCTCTAACAGTCCGACTTGAAGAGATGCGCATCAAGAGGAGAGACTCTGAGCAATGGATGCACCATCGACTGCTTCCACCAGACTTGAGAGAAAAAGTTAGGCGCTACGATCAGTACAAATGGCTTGAAACCAGAGGTGTTGATGAAGAGAGCTTGGTTCAGAGTCTGCCTAAAGATCTTAGGAGAGACATTAAACGACATCTCTGTCTCAATTTGGTTAGAAGGGTCCCATTGTTTGCAAACATGGATGAGCGTCTCCTAGACGCAATATGCGAGAGGCTAAAACCAACACTATACACCGAGAACACATACATAGTACGAGAAGGCGACCCAGTCGACGAAATGCTCTTCATAATCCGCGGCCGTCTAGAGAGCGTCACCACCGACGGCGGCCGTAGCGGATTCTACAACCGTGGCATATTAAAAGAAGGCGATTTCTGTGGCGAAGAGCTTTTAACCTGGGCTCTCGACCCCAAATCCGGCTCCAACCTCCCTTCCTCCACTCGCACCGTCCATGCCCTAACCGAGGTCGAAGCCTTCGCCTTAGAGGCCGAGGAACTCAAATTCGTAGCCAGTCAGTTCCGTCGCCTCCACAGTCGCCAAGTTCAACACACCTTTAGATTCTACTCCCAGCAGTGGCGAACTTGGGCGTCGTGTTTCATACAGGCAGCGTGGCGGCGGTATTTAAAACGGAAAATCGCGGAGCTGCGACGGAAGGAGGAGGAGGAAGAGGTTGCGGCGGCGTATAGTACGTCGAGACTTGGGGCTACGATTTTGGCGTCGAGATTTGCGGCCAATGCGCTTAGAGGACATCGAATGAGAAACGTGAGTGGGAAGAGCTTGATTAGCTTGCAGAAGCCGAAGGAACCTGATTTTTCTGTTTACAAAGGAGAGTAA 2196 47.72 MFDCGGYKSQYIGGHKEKFVRLDDLDSNLSVPSGTSKMKKCRFNLEGLPLPFISRSKPQNASKSFRRGVQRSSDGIITLGRSLRSGVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTQLAVTTTTVRTAIDVFYLIRMGFQFRTAYIAPSSRVFGRGELVIDPTEIAQRYLQRYFIADFLSVLPLPQLVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACKSSGKCNINYLYCGNKHMAGYKAWRNISVDVLTKKCTALGDNLPFNYGIYTQAISSGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFYNRGILKEGDFCGEELLTWALDPKSGSNLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKIAELRRKEEEEEVAAAYSTSRLGATILASRFAANALRGHRMRNVSGKSLISLQKPKEPDFSVYKGE* 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34127090 34131429 - CsaV3_3G041910.1 Csa03g03885 524790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03885 731 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 728 - -
Csa03g03885 731 SMART cnmp_10 511 642 IPR000595 -
Csa03g03885 731 Gene3D - 115 436 - -
Csa03g03885 731 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 13 728 - -
Csa03g03885 731 CDD CAP_ED 511 642 IPR000595 -
Csa03g03885 731 ProSiteProfiles cAMP/cGMP binding motif profile. 511 641 IPR000595 -
Csa03g03885 731 SUPERFAMILY Voltage-gated potassium channels 106 433 - -
Csa03g03885 731 Gene3D Helix hairpin bin 438 502 - -
Csa03g03885 731 Gene3D Jelly Rolls 509 629 IPR014710 -
Csa03g03885 731 Coils Coil 659 679 - -
Csa03g03885 731 Pfam Cyclic nucleotide-binding domain 532 622 IPR000595 -
Csa03g03885 731 SUPERFAMILY cAMP-binding domain-like 441 631 IPR018490 -
Csa03g03885 731 Pfam Ion transport protein 113 438 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa03g03885 731 ProSiteProfiles IQ motif profile. 647 676 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00546 Csa-Chr2:3839081 Csa03g03885 Csa-Chr3:34127090 0 dispersed
Csa03g00811 Csa-Chr3:6975043 Csa03g03885 Csa-Chr3:34127090 0 dispersed
Csa03g03885 Csa-Chr3:34127090 Csa06g01202 Csa-Chr6:10197240 0 dispersed
Csa03g03885 Csa-Chr3:34127090 Csa05g00059 Csa-Chr5:292711 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03885 K05391 - csv:101221166 1400.96