Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03897 ATGGCCGCCGCCGGAGGAACAGAGGCTTTCCCCGATCTCGGCCGCCACTGCCAGCACTCCGATTGCCACCAACTCGACTTCCTCCCCTTCACCTGCGACGGTTGCCAAAAGGTGTTCTGTTTGGATCATCGCGGTTTCAAATCCCACGACTGCCCTCAATCCGATCGGAACAGCAGAAAAGTTGTGGTCTGCGAAATCTGCTCGACGTCGATCGAGACCACCGGGAAGGACGGTGGCGACGAGACCAAGGTTCTGGAGAGGCATCACGAATCGGGGGATTGCGATCCAAGCAAAAAGAAGAAGCCCACGTGTGCGGTGAAGCGGTGCCGGGAAATTCTTACGTTTTCGAATACTTGTGTGTGTAAAACCTGCCGGTTGAAAGTGTGTTTGAAGCACCGGTTTCCGGCGGAGCATGGATGTGGAGGTCCGTCGTCAAGGGCAGGGGCGGTGGTAGATAAAGGGCGGTGGAATGAGAAGTTTATGGTGGCTTTGGGGTTGAGGAGCGAGGGCGATTGTGGGAAGAGGGAACGTGCAAGGACGGGGGGGAAGGGATCTTCTCCGACTGCCCCATCTGTTAAAGCTTGTTGA 588 56.46 MAAAGGTEAFPDLGRHCQHSDCHQLDFLPFTCDGCQKVFCLDHRGFKSHDCPQSDRNSRKVVVCEICSTSIETTGKDGGDETKVLERHHESGDCDPSKKKKPTCAVKRCREILTFSNTCVCKTCRLKVCLKHRFPAEHGCGGPSSRAGAVVDKGRWNEKFMVALGLRSEGDCGKRERARTGGKGSSPTAPSVKAC* 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34202159 34203546 - CsaV3_3G042030.1 Csa03g03897 524802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03897 195 Pfam AN1-like Zinc finger 104 142 IPR000058 GO:0008270
Csa03g03897 195 Pfam AN1-like Zinc finger 17 54 IPR000058 GO:0008270
Csa03g03897 195 SUPERFAMILY AN1-like Zinc finger 7 60 IPR035896 -
Csa03g03897 195 Gene3D - 80 155 IPR035896 -
Csa03g03897 195 SMART AN1_Zf_4 17 56 IPR000058 GO:0008270
Csa03g03897 195 SMART AN1_Zf_4 104 145 IPR000058 GO:0008270
Csa03g03897 195 ProSiteProfiles Zinc finger AN1-type profile. 98 148 IPR000058 GO:0008270
Csa03g03897 195 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 7 186 - -
Csa03g03897 195 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 7 186 - -
Csa03g03897 195 ProSiteProfiles Zinc finger AN1-type profile. 11 59 IPR000058 GO:0008270
Csa03g03897 195 Gene3D - 2 70 IPR035896 -
Csa03g03897 195 SUPERFAMILY AN1-like Zinc finger 64 148 IPR035896 -
Csa03g03897 195 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03897 Csa-Chr3:34202159 Csa04g01079 Csa-Chr4:8821165 4.59E-39 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03897 - - csv:101220304 424.476