Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03897 | ATGGCCGCCGCCGGAGGAACAGAGGCTTTCCCCGATCTCGGCCGCCACTGCCAGCACTCCGATTGCCACCAACTCGACTTCCTCCCCTTCACCTGCGACGGTTGCCAAAAGGTGTTCTGTTTGGATCATCGCGGTTTCAAATCCCACGACTGCCCTCAATCCGATCGGAACAGCAGAAAAGTTGTGGTCTGCGAAATCTGCTCGACGTCGATCGAGACCACCGGGAAGGACGGTGGCGACGAGACCAAGGTTCTGGAGAGGCATCACGAATCGGGGGATTGCGATCCAAGCAAAAAGAAGAAGCCCACGTGTGCGGTGAAGCGGTGCCGGGAAATTCTTACGTTTTCGAATACTTGTGTGTGTAAAACCTGCCGGTTGAAAGTGTGTTTGAAGCACCGGTTTCCGGCGGAGCATGGATGTGGAGGTCCGTCGTCAAGGGCAGGGGCGGTGGTAGATAAAGGGCGGTGGAATGAGAAGTTTATGGTGGCTTTGGGGTTGAGGAGCGAGGGCGATTGTGGGAAGAGGGAACGTGCAAGGACGGGGGGGAAGGGATCTTCTCCGACTGCCCCATCTGTTAAAGCTTGTTGA | 588 | 56.46 | MAAAGGTEAFPDLGRHCQHSDCHQLDFLPFTCDGCQKVFCLDHRGFKSHDCPQSDRNSRKVVVCEICSTSIETTGKDGGDETKVLERHHESGDCDPSKKKKPTCAVKRCREILTFSNTCVCKTCRLKVCLKHRFPAEHGCGGPSSRAGAVVDKGRWNEKFMVALGLRSEGDCGKRERARTGGKGSSPTAPSVKAC* | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 34202159 | 34203546 | - | CsaV3_3G042030.1 | Csa03g03897 | 524802 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03897 | 195 | Pfam | AN1-like Zinc finger | 104 | 142 | IPR000058 | GO:0008270 | |
Csa03g03897 | 195 | Pfam | AN1-like Zinc finger | 17 | 54 | IPR000058 | GO:0008270 | |
Csa03g03897 | 195 | SUPERFAMILY | AN1-like Zinc finger | 7 | 60 | IPR035896 | - | |
Csa03g03897 | 195 | Gene3D | - | 80 | 155 | IPR035896 | - | |
Csa03g03897 | 195 | SMART | AN1_Zf_4 | 17 | 56 | IPR000058 | GO:0008270 | |
Csa03g03897 | 195 | SMART | AN1_Zf_4 | 104 | 145 | IPR000058 | GO:0008270 | |
Csa03g03897 | 195 | ProSiteProfiles | Zinc finger AN1-type profile. | 98 | 148 | IPR000058 | GO:0008270 | |
Csa03g03897 | 195 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN 1 | 7 | 186 | - | - | |
Csa03g03897 | 195 | PANTHER | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED | 7 | 186 | - | - | |
Csa03g03897 | 195 | ProSiteProfiles | Zinc finger AN1-type profile. | 11 | 59 | IPR000058 | GO:0008270 | |
Csa03g03897 | 195 | Gene3D | - | 2 | 70 | IPR035896 | - | |
Csa03g03897 | 195 | SUPERFAMILY | AN1-like Zinc finger | 64 | 148 | IPR035896 | - | |
Csa03g03897 | 195 | MobiDBLite | consensus disorder prediction | 172 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03897 | Csa-Chr3:34202159 | Csa04g01079 | Csa-Chr4:8821165 | 4.59E-39 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03897 | - | - | csv:101220304 | 424.476 |