Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa03g03898 | ATGGGGATTCTGAAGCTTCTCTTCCTTCTTCTTTCAACGGCGTCGTTTTGTTCTCTATCGGAATCCCTTCCTCTCACCCCGAATTACTACCAGAAATCCTGCCCGAGATTCAGTCAGATTATCCAAGATACAGTCACCAACAAACAGATCACTAGTCCTTCCACCGCTGCTGGTACTCTTCGTCTTTTCCTCCACGACTGCCTTCCCAACGGCTGTGACGGCTCCGTCCTTATCTCCTCCACTCCTTTCAACAAAGCCGAGCGCGATGCCGACATCAACCTCTCTCTCCCAGGCGACGCCTTCGATGTTATCGTTCGAGCCAAGACTGCTCTCGAGCTCGCATGTCCCAACACTGTCTCTTGTGCTGACATTCTCGCCCTTGCCACTCGTGACCTCGTCACCATGGTTGGCGGACCTTACTACAATGTTCTTCTTGGTCGTAGAGATGGACGTGTGTCTAAAGCATCGACGATTCCTGGCTCTTTACCGAAAGCTACCTCGCCGATTCCTCAGATTATTGATATTTTTAAAGCTCGGGGGTTTACTGTGCAGGAAATGGTAGCCTTAAGTGGTGCTCATACGATTGGATTCTCGCATTGTAAGGAATTCGGTCCTCAGATCTATAATTATAGCAAGTCGTCTTCTTATGATACGCAGTATAACCCTAGATTCGCGCAAGGGTTGCAAAAGGCTTGTTCTGGTTATGACAAGAATCCTACATTATCGGTTTTCAATGACATTATGACTCCCAACAAATTTGATAACTCTTACTTCCAGAATCTGCCGAAGGGATTGGGGATCTTGAAGTCTGATCATGGGTTGTATAATGATTGGAGGACGAGGCCATTTGTCGAGGCGTATGCGGCGGATGAGAAAAAGTTCTTCAATGATTTTGCTCGAGCGATGGAGAAGTTGAGTAATTATAAAGTTGTGACAGGGAATCAAGGGGAGATTAGGCATAAGTGTGATGCGATTAATTGA | 981 | 46.79 | MGILKLLFLLLSTASFCSLSESLPLTPNYYQKSCPRFSQIIQDTVTNKQITSPSTAAGTLRLFLHDCLPNGCDGSVLISSTPFNKAERDADINLSLPGDAFDVIVRAKTALELACPNTVSCADILALATRDLVTMVGGPYYNVLLGRRDGRVSKASTIPGSLPKATSPIPQIIDIFKARGFTVQEMVALSGAHTIGFSHCKEFGPQIYNYSKSSSYDTQYNPRFAQGLQKACSGYDKNPTLSVFNDIMTPNKFDNSYFQNLPKGLGILKSDHGLYNDWRTRPFVEAYAADEKKFFNDFARAMEKLSNYKVVTGNQGEIRHKCDAIN* | 327 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 34204986 | 34207218 | - | CsaV3_3G042040.1 | Csa03g03898 | 524803 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa03g03898 | 326 | Pfam | Peroxidase | 46 | 290 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 185 | 195 | IPR019793 | - | |
| Csa03g03898 | 326 | CDD | secretory_peroxidase | 25 | 325 | IPR033905 | GO:0004601|GO:0042744 | |
| Csa03g03898 | 326 | PRINTS | Haem peroxidase superfamily signature | 56 | 70 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Haem peroxidase superfamily signature | 119 | 136 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Haem peroxidase superfamily signature | 137 | 149 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Haem peroxidase superfamily signature | 185 | 200 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Haem peroxidase superfamily signature | 246 | 261 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | Gene3D | - | 28 | 326 | - | - | |
| Csa03g03898 | 326 | PRINTS | Plant peroxidase signature | 34 | 53 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Plant peroxidase signature | 58 | 78 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Plant peroxidase signature | 99 | 112 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Plant peroxidase signature | 118 | 128 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Plant peroxidase signature | 137 | 152 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Plant peroxidase signature | 184 | 196 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Plant peroxidase signature | 244 | 259 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Plant peroxidase signature | 260 | 277 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PRINTS | Plant peroxidase signature | 300 | 313 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | PANTHER | - | 6 | 326 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | Gene3D | Peroxidase, domain 2 | 163 | 305 | - | - | |
| Csa03g03898 | 326 | PANTHER | PEROXIDASE 31 | 6 | 326 | - | - | |
| Csa03g03898 | 326 | SUPERFAMILY | Heme-dependent peroxidases | 25 | 326 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
| Csa03g03898 | 326 | ProSiteProfiles | Plant heme peroxidase family profile. | 24 | 326 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g03898 | Csa-Chr3:34204986 | Csa05g02926 | Csa-Chr5:29698277 | 3.37E-168 | dispersed | |
| Csa06g02144 | Csa-Chr6:19183659 | Csa03g03898 | Csa-Chr3:34204986 | 3.78E-16 | transposed | |
| Csa06g03346 | Csa-Chr6:27925057 | Csa03g03898 | Csa-Chr3:34204986 | 3.90E-14 | transposed | |
| Csa07g00093 | Csa-Chr7:874920 | Csa03g03898 | Csa-Chr3:34204986 | 1.32E-18 | transposed | |
| Csa01g02343 | Csa-Chr1:20616604 | Csa03g03898 | Csa-Chr3:34204986 | 1.99E-17 | transposed | |
| Csa01g00826 | Csa-Chr1:5207608 | Csa03g03898 | Csa-Chr3:34204986 | 5.91E-139 | wgd | |
| Csa01g00179 | Csa-Chr1:1163120 | Csa03g03898 | Csa-Chr3:34204986 | 1.08E-130 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa03g03898 | K00430 | - | csv:101219829 | 650.203 |