Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03909 ATGGGGTGGAAGTTGTTTTACAAAGAATTGGTGCCATTCGCTGCCATGGTTGCGGCGATGTTCGCCACCGTTGGTTCCAACACCGGCTTCAAAGCCGCCACAGCTCGAGGCCTCAGCTACTATGTCTTCACCCTCTACGTTTGCATCGTCGCCGCCGCCGCCCTCATCCCTTTCGCCTTCTTCTTCCATAAGTCAGCACCGCTTCCTCCCAACAAGATTTCCTTCTTTTTCCAGATTGTTTGCCTCTCTGCACTCGGGCTTTCCTGTCAGTTGTTTGGAAACAAAGGACTTGAGTATAGCTCACTGACTCTTTCATCAGCCATTAGCAACTTAATTCCAGCTTTCACTTTCATGTTGGCTGTCTCTTTTGGAATGGAGAAGATAGATTTGAAAAGAAGCAGCAGCATTGTGAAAATAGTGGGCTCAGCGGTGTCCATTTCAGGTGCTTTGGTCGTGGTTTTGTACAAAGGCCCAATCGTGATATCAAACCCATATTCTCCTGGCCCAAAACATTTGGACTCTTCACATCCTCAGCCCAATTGGATAATGGGTGGCCTTTGCTTTGTTTTTCAGTACCTTTTCAATTCCTTTTGGTACATTCTTCAGACCAAAATCATCAAAGTATACCCAGATGAGATAACTGTGGTAGCAGTATACTATTTTATTCAAGCACTTTTGACTGCTCCAGTTTGTTTGATAGCAGAAACAGATATGAATGCTTGGAAGCTAACAAATCCACTCATTTTCCTTTTCATCCTCAATTCGGGTTTGATGGGGCAGTCATTTGTGGCTGCTATACACACATGGGGACTAAACTTGAAAGGCCCTGTTTATGTTTCTAGTTTTAGGCCATTGTCCATTGCCATTGCTGCTGCTATGGGTGCCATTCTTCTTGGTGATGATCTTCATCTTGGAAGTATAATTGGAGCAATCATAATATCAATTGGGTTTTATGGCATATTGTGGGGGAAAGCAAAAGAAGAAGAATTGAAGGGGTTGGAAAATGTTTGTGGGTTGGAATCTTCATCCAAAGCTCCATTGTTGCAATAA 1050 43.81 MGWKLFYKELVPFAAMVAAMFATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFAFFFHKSAPLPPNKISFFFQIVCLSALGLSCQLFGNKGLEYSSLTLSSAISNLIPAFTFMLAVSFGMEKIDLKRSSSIVKIVGSAVSISGALVVVLYKGPIVISNPYSPGPKHLDSSHPQPNWIMGGLCFVFQYLFNSFWYILQTKIIKVYPDEITVVAVYYFIQALLTAPVCLIAETDMNAWKLTNPLIFLFILNSGLMGQSFVAAIHTWGLNLKGPVYVSSFRPLSIAIAAAMGAILLGDDLHLGSIIGAIIISIGFYGILWGKAKEEELKGLENVCGLESSSKAPLLQ* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34278738 34282283 - CsaV3_3G042150.1 Csa03g03909 524814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03909 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 155 - -
Csa03g03909 349 PANTHER WAT1-RELATED PROTEIN 8 331 - -
Csa03g03909 349 Pfam EamA-like transporter family 15 146 IPR000620 GO:0016020|GO:0016021
Csa03g03909 349 Pfam EamA-like transporter family 190 321 IPR000620 GO:0016020|GO:0016021
Csa03g03909 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 326 - -
Csa03g03909 349 PANTHER WAT1-RELATED PROTEIN 8 331 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03909 Csa-Chr3:34278738 Csa03g03911 Csa-Chr3:34294356 1.97E-147 dispersed
Csa03g03909 Csa-Chr3:34278738 Csa03g03910 Csa-Chr3:34287103 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03909 - - csv:116402794 643.654