Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03910 ATGGGGTGGAAGTTGTTTTACAAAGAATTGGTGCCATTCGCTGCCATGGTTGCGGCGGAGTTCGCCACCGTTGGTTCCAACACCGGCTTCAAAGCCGCCACAGCTCGAGGCCTCAGCTACTATGTCTTCACCCTCTACGTTTGCATCGTCGCCGCCGCCGCCCTCATCCCTTTCGCCTTCTTCTTCCATAAGTCAGCGCAGCTTCCTCCCAACAAGATTTCCTTCTTTTTCCAGATTGTTTGCCTCTCTGCACTCGGGCTTTCCTGTCAGTTGCTTGGAAACAAAGGACTTGAGTATAGCTCACCGACTCTTTCATCCGCCATTAGCAACTTAATTCCAGCTTTCACTTTCATGTTGGCTGTCTCTTTTGGAATGGAGAAGATAGATTTGAAAAGAAGCAGCAGCATTGTGAAAATAGTGGGCTCAGCGGTGTCCATTTCAGGTGCTTTGGTCGTGGTTTTGTACAAAGGCCCAATCGTGATATCAAACCCATATTCTCCTGGCCCAAAACAATTGGACTCTTCACATCCTCAGCCCAATTGGATAATGGGTGGCCTTTGCTTTGTTTTTCAGTACCTTTGCAATTCCTTTTGGTACATTCTTCAGACCAAAATCATCAAAGTATACCCAGATGAGATAACTGTGGTAGCAGTATACTATTTTATTCAAGCACTTTTGACTGCTCCAGTTTGTTTGATAGCAGAAACGGATATGAATGCTTGGAAGCTAACAAATCCGCTCATTTTCCTTTTCATCTTCAACTCGGGTTTGATGGGGCAGTCATTTGTGGCTGCTATACACACATGGGGACTAAACTTGAAAGGCCCTGTTTATGTTTCTAGTTTTAGGCCATTGTCCATTGCCATTGCTGCTGCTATGGGTGCCATTCTTCTTGGTGATGATCTTCATCTTGGAAGTATAATTGGAGCAATCATAATATCAATTGGGTTTTATGGCATATTGTGGGGGAAAGCAAAAGAAGAAGAATTGAAGGGGTTAGAAGATGTTTGTGGGTTGGAATCTTCATCCAAAGCTCCATTGTTGCAATACTATAAACTTGAAGAAGCATAA 1071 44.16 MGWKLFYKELVPFAAMVAAEFATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFAFFFHKSAQLPPNKISFFFQIVCLSALGLSCQLLGNKGLEYSSPTLSSAISNLIPAFTFMLAVSFGMEKIDLKRSSSIVKIVGSAVSISGALVVVLYKGPIVISNPYSPGPKQLDSSHPQPNWIMGGLCFVFQYLCNSFWYILQTKIIKVYPDEITVVAVYYFIQALLTAPVCLIAETDMNAWKLTNPLIFLFIFNSGLMGQSFVAAIHTWGLNLKGPVYVSSFRPLSIAIAAAMGAILLGDDLHLGSIIGAIIISIGFYGILWGKAKEEELKGLEDVCGLESSSKAPLLQYYKLEEA* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34287103 34290898 - CsaV3_3G042160.1 Csa03g03910 524815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03910 356 Pfam EamA-like transporter family 24 146 IPR000620 GO:0016020|GO:0016021
Csa03g03910 356 Pfam EamA-like transporter family 192 321 IPR000620 GO:0016020|GO:0016021
Csa03g03910 356 PANTHER WAT1-RELATED PROTEIN 8 331 - -
Csa03g03910 356 PANTHER WAT1-RELATED PROTEIN 8 331 IPR030184 GO:0016021|GO:0022857
Csa03g03910 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 155 - -
Csa03g03910 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 326 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03910 Csa05g02916 CCT
Csa03g03910 Csa05g02916 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03910 Csa-Chr3:34287103 Csa05g02916 Csa-Chr5:29640781 4.55E-96 dispersed
Csa03g03909 Csa-Chr3:34278738 Csa03g03910 Csa-Chr3:34287103 0 tandem
Csa03g03910 Csa-Chr3:34287103 Csa03g03911 Csa-Chr3:34294356 6.66E-150 tandem
Csa03g03910 Csa-Chr3:34287103 Csa05g02357 Csa-Chr5:25883079 1.98E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03910 - - csv:101211165 669.848