Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03910 | ATGGGGTGGAAGTTGTTTTACAAAGAATTGGTGCCATTCGCTGCCATGGTTGCGGCGGAGTTCGCCACCGTTGGTTCCAACACCGGCTTCAAAGCCGCCACAGCTCGAGGCCTCAGCTACTATGTCTTCACCCTCTACGTTTGCATCGTCGCCGCCGCCGCCCTCATCCCTTTCGCCTTCTTCTTCCATAAGTCAGCGCAGCTTCCTCCCAACAAGATTTCCTTCTTTTTCCAGATTGTTTGCCTCTCTGCACTCGGGCTTTCCTGTCAGTTGCTTGGAAACAAAGGACTTGAGTATAGCTCACCGACTCTTTCATCCGCCATTAGCAACTTAATTCCAGCTTTCACTTTCATGTTGGCTGTCTCTTTTGGAATGGAGAAGATAGATTTGAAAAGAAGCAGCAGCATTGTGAAAATAGTGGGCTCAGCGGTGTCCATTTCAGGTGCTTTGGTCGTGGTTTTGTACAAAGGCCCAATCGTGATATCAAACCCATATTCTCCTGGCCCAAAACAATTGGACTCTTCACATCCTCAGCCCAATTGGATAATGGGTGGCCTTTGCTTTGTTTTTCAGTACCTTTGCAATTCCTTTTGGTACATTCTTCAGACCAAAATCATCAAAGTATACCCAGATGAGATAACTGTGGTAGCAGTATACTATTTTATTCAAGCACTTTTGACTGCTCCAGTTTGTTTGATAGCAGAAACGGATATGAATGCTTGGAAGCTAACAAATCCGCTCATTTTCCTTTTCATCTTCAACTCGGGTTTGATGGGGCAGTCATTTGTGGCTGCTATACACACATGGGGACTAAACTTGAAAGGCCCTGTTTATGTTTCTAGTTTTAGGCCATTGTCCATTGCCATTGCTGCTGCTATGGGTGCCATTCTTCTTGGTGATGATCTTCATCTTGGAAGTATAATTGGAGCAATCATAATATCAATTGGGTTTTATGGCATATTGTGGGGGAAAGCAAAAGAAGAAGAATTGAAGGGGTTAGAAGATGTTTGTGGGTTGGAATCTTCATCCAAAGCTCCATTGTTGCAATACTATAAACTTGAAGAAGCATAA | 1071 | 44.16 | MGWKLFYKELVPFAAMVAAEFATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFAFFFHKSAQLPPNKISFFFQIVCLSALGLSCQLLGNKGLEYSSPTLSSAISNLIPAFTFMLAVSFGMEKIDLKRSSSIVKIVGSAVSISGALVVVLYKGPIVISNPYSPGPKQLDSSHPQPNWIMGGLCFVFQYLCNSFWYILQTKIIKVYPDEITVVAVYYFIQALLTAPVCLIAETDMNAWKLTNPLIFLFIFNSGLMGQSFVAAIHTWGLNLKGPVYVSSFRPLSIAIAAAMGAILLGDDLHLGSIIGAIIISIGFYGILWGKAKEEELKGLEDVCGLESSSKAPLLQYYKLEEA* | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 34287103 | 34290898 | - | CsaV3_3G042160.1 | Csa03g03910 | 524815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03910 | 356 | Pfam | EamA-like transporter family | 24 | 146 | IPR000620 | GO:0016020|GO:0016021 | |
Csa03g03910 | 356 | Pfam | EamA-like transporter family | 192 | 321 | IPR000620 | GO:0016020|GO:0016021 | |
Csa03g03910 | 356 | PANTHER | WAT1-RELATED PROTEIN | 8 | 331 | - | - | |
Csa03g03910 | 356 | PANTHER | WAT1-RELATED PROTEIN | 8 | 331 | IPR030184 | GO:0016021|GO:0022857 | |
Csa03g03910 | 356 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 46 | 155 | - | - | |
Csa03g03910 | 356 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 230 | 326 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g03910 | Csa05g02916 | CCT | |
Csa03g03910 | Csa05g02916 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03910 | Csa-Chr3:34287103 | Csa05g02916 | Csa-Chr5:29640781 | 4.55E-96 | dispersed | |
Csa03g03909 | Csa-Chr3:34278738 | Csa03g03910 | Csa-Chr3:34287103 | 0 | tandem | |
Csa03g03910 | Csa-Chr3:34287103 | Csa03g03911 | Csa-Chr3:34294356 | 6.66E-150 | tandem | |
Csa03g03910 | Csa-Chr3:34287103 | Csa05g02357 | Csa-Chr5:25883079 | 1.98E-41 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03910 | - | - | csv:101211165 | 669.848 |