Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03911 ATGGAGCGCAGTCTTCTTTACAAGGAATTCGCTCCACTCGCCGGCATGATCGCCGCCGAGTGCGCCACCGTCGGCTCTAACACCGTCTACAAAGCCATTTCCGGCCACCAAATCAGCTTCTATGTCTTCACCTTCTACACTTGTCTAGCTGCCGCTCTCGTCCTTCTTCCTTTCGCCTTAATCTTCCGCAGATCTGGAGTTTTTCCGTCCGAGAAGTTGTCGTTCTTCTTAAGATTGATTAGCTTATCGGCTATGGGAGTTGGATGTCAACTATTTTCGTATAAAGGATTGGAGTATAGTTCACCAACGCTTGCTTCCGCCATTAGTAATCTCATTCCAGCTCTTACTTTCATCTTGGCCGTTCTTTTCGGGATGGAGAAAGTAGCTTTGAGAAGCTCAAGCAGCATAGCCAAAATCGTTGGCTCAACAGTCTCCATAACAGGTGCACTGGTAGTGGTTCTTTATAAAGGTCCAATCATTCTACCAAACCCATTTTCTAGTCCAACAAGATTGAATCTTCCTCCTCCCTTGGGCTCTTCCCAACCAAATTGGATTTTGGGTGGCCTCTGCTTCTTTTTTCAGTACCTTCTCAACTCTTTCTGGTACATTGTTCTGACCCAAACGATGAATATATATCCAGATGAACTAGTTGTGGTGTGTTTATTCTATGTTTTCGAGGTTTTAATATCTGCACCAATATGCCTATTAGCAGAAGGAAACTTGAGTGCTTGGAAGCTGAAAAATAGTATGGAAGTGGTTGCTGTTTTAAACTCGGGATGTGTGGGTCAATCCTTTGTCTCTGCAATCCATACATGGGGTGTACATGTGAAAGGGCCTGTTTACGTATCAAGTTTCAGGCCACTCTCAATTGCCATTGCTGCTGTTACTGGTGTTATTTTCCTTGGGGATGATCTTCATCTTGGAAGTATAATTGGAGCAATAATAATAGCAAGTGGGTTTTACTCTATAATGTGGGGGAAAATCAAAGAAGAGGAGTTGAAGGGACAGGATGATTTCTCAAACTTGGAGTCTTCATCCAAAGATAAGATTCCATTGTTGAAAAGCTGTAAAGTTCAAGCTGACTAA 1086 43.19 MERSLLYKEFAPLAGMIAAECATVGSNTVYKAISGHQISFYVFTFYTCLAAALVLLPFALIFRRSGVFPSEKLSFFLRLISLSAMGVGCQLFSYKGLEYSSPTLASAISNLIPALTFILAVLFGMEKVALRSSSSIAKIVGSTVSITGALVVVLYKGPIILPNPFSSPTRLNLPPPLGSSQPNWILGGLCFFFQYLLNSFWYIVLTQTMNIYPDELVVVCLFYVFEVLISAPICLLAEGNLSAWKLKNSMEVVAVLNSGCVGQSFVSAIHTWGVHVKGPVYVSSFRPLSIAIAAVTGVIFLGDDLHLGSIIGAIIIASGFYSIMWGKIKEEELKGQDDFSNLESSSKDKIPLLKSCKVQAD* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34294356 34301095 - CsaV3_3G042170.1 Csa03g03911 524816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03911 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 155 - -
Csa03g03911 361 Pfam EamA-like transporter family 20 152 IPR000620 GO:0016020|GO:0016021
Csa03g03911 361 PANTHER WAT1-RELATED PROTEIN 11 333 IPR030184 GO:0016021|GO:0022857
Csa03g03911 361 PANTHER WAT1-RELATED PROTEIN 11 333 - -
Csa03g03911 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 328 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03911 Csa05g02357 CCT
Csa03g03911 Csa05g02357 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03909 Csa-Chr3:34278738 Csa03g03911 Csa-Chr3:34294356 1.97E-147 dispersed
Csa03g03911 Csa-Chr3:34294356 Csa05g02916 Csa-Chr5:29640781 2.39E-93 dispersed
Csa03g03910 Csa-Chr3:34287103 Csa03g03911 Csa-Chr3:34294356 6.66E-150 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03911 - - csv:101211416 688.337