Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03918 ATGGATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGCTCGGCGGCCGCTACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGACCCTGATAGCGACATTGTAGCACAATGGAACCGCGTGTTCCTAGTGACATGCTTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGGCCGGCATGCCTGACCTCGGAGGTGAATCTGGGAGTGGCGATCACGTTCTTCAGAACGGTAACCGATCTGTTCTTCTTGTTGCACATGGTGTTGAAGTTTCGAACGGCGTATGTTGCTCCAAGCTCTAGGGTTTTTGGAAGAGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAGTCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTAGTGATTCCAATAACAAGAAACTCAAGAGTGGATCATGCCAACAACACAATTGCTCTTCTTGTTCTTCTACAATACGTCCCACGGTTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACTACTGGTGTTGTTGCCAAAACTGCATGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCCAGTCATGTTTTGGGATCTACATGGTATTTGTTGTCCATAGGGAGACAGTTTTCATGTTGGAAATCAGAATGTGCAAAGGAAAATGCCTCCCAAGTTCTAACATGCCTTCCCATCTTCTTGGATTGTACCAGTTTGAATGACACTTTAAGACAATATTGGCTTAATGTCACTCAAGTTACTTCCAAATGTGATCCAAGGAATGAAAACATTAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATATGGCCAAACTTTGGATACAACAACTTACATTGGAGAAACATTATTTTGCATATCAACTTGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCCATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGAGACACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAAGAACGAGTTCGCCGATTCGTTCAATATAAATGGCTGGCCACGAGAGGGGTTAATGAAGAATCCATTTTGCGTTCGTTACCTATAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTTCGTCGTGTGCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTCTCGTCTCATCCTTGTGCACTCAAGGAACGTACATTGTGCGAGAAGATGATCCAGTTAATGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGTTCGACGACCAATGGTGGTCGAGATGGCTTTTTCAACTCTATTACACTAAAACCAGGTGATTTTTGTGGTGAAGAACTATTGACATGGGCGTTGATGCCAAGTTCTAGTTTGAACATGCCTTCTTCTACTCGAACCGTCAGAGCACTTACCGAAGTTGAAGCGTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCCGGACAATTCAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTACTATTCCCATCAATGGAGAACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAACAGCATACAGAGACAGCTTGAGTTCCTATGCAGATTCAATGCAACAATATAACGAATACGATATCGAGCTAGCAGAAGAAAATTACGATGATGACAGCGACAACACCATTGAAGACGAAGACGACATGTCTTCTGCAGACTACAAATCACAGCATCTAGGGGCAACAATTTTGGCTTCAAAGTTTGCTGCCAATACTAGAAGAGGAGTTAATCAAAAGGGTCAAACATCCAAACCTTCAAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2145 43.73 MDRIIQSPASKFRPFRRQLIGSSSDSATGSAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVAITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPITRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASQVLTCLPIFLDCTSLNDTLRQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRDGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSTAYRDSLSSYADSMQQYNEYDIELAEENYDDDSDNTIEDEDDMSSADYKSQHLGATILASKFAANTRRGVNQKGQTSKPSSLKMPKLFKPDEPDFSMDG* 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34344343 34347962 + CsaV3_3G042240.1 Csa03g03918 524823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03918 714 SUPERFAMILY cAMP-binding domain-like 386 581 IPR018490 -
Csa03g03918 714 MobiDBLite consensus disorder prediction 700 714 - -
Csa03g03918 714 CDD CAP_ED 456 587 IPR000595 -
Csa03g03918 714 Pfam Ion transport protein 58 383 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa03g03918 714 SUPERFAMILY Voltage-gated potassium channels 49 378 - -
Csa03g03918 714 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 712 - -
Csa03g03918 714 ProSiteProfiles cAMP/cGMP binding motif profile. 456 586 IPR000595 -
Csa03g03918 714 MobiDBLite consensus disorder prediction 681 714 - -
Csa03g03918 714 MobiDBLite consensus disorder prediction 681 697 - -
Csa03g03918 714 Gene3D Jelly Rolls 454 574 IPR014710 -
Csa03g03918 714 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 37 712 - -
Csa03g03918 714 Pfam Cyclic nucleotide-binding domain 479 566 IPR000595 -
Csa03g03918 714 SMART cnmp_10 456 587 IPR000595 -
Csa03g03918 714 Gene3D Helix hairpin bin 383 447 - -
Csa03g03918 714 Gene3D - 61 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03918 Csa-Chr3:34344343 Csa06g01202 Csa-Chr6:10197240 0 dispersed
Csa06g02572 Csa-Chr6:22721654 Csa03g03918 Csa-Chr3:34344343 1.86E-102 dispersed
Csa01g01942 Csa-Chr1:16308637 Csa03g03918 Csa-Chr3:34344343 0 transposed
Csa03g04413 Csa-Chr3:38472710 Csa03g03918 Csa-Chr3:34344343 0 transposed
Csa01g00161 Csa-Chr1:1043898 Csa03g03918 Csa-Chr3:34344343 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03918 K05391 - csv:101216651 1415.21