Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03918 | ATGGATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGCTCGGCGGCCGCTACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGACCCTGATAGCGACATTGTAGCACAATGGAACCGCGTGTTCCTAGTGACATGCTTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGGCCGGCATGCCTGACCTCGGAGGTGAATCTGGGAGTGGCGATCACGTTCTTCAGAACGGTAACCGATCTGTTCTTCTTGTTGCACATGGTGTTGAAGTTTCGAACGGCGTATGTTGCTCCAAGCTCTAGGGTTTTTGGAAGAGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAGTCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTAGTGATTCCAATAACAAGAAACTCAAGAGTGGATCATGCCAACAACACAATTGCTCTTCTTGTTCTTCTACAATACGTCCCACGGTTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACTACTGGTGTTGTTGCCAAAACTGCATGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCCAGTCATGTTTTGGGATCTACATGGTATTTGTTGTCCATAGGGAGACAGTTTTCATGTTGGAAATCAGAATGTGCAAAGGAAAATGCCTCCCAAGTTCTAACATGCCTTCCCATCTTCTTGGATTGTACCAGTTTGAATGACACTTTAAGACAATATTGGCTTAATGTCACTCAAGTTACTTCCAAATGTGATCCAAGGAATGAAAACATTAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATATGGCCAAACTTTGGATACAACAACTTACATTGGAGAAACATTATTTTGCATATCAACTTGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCCATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGAGACACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAAGAACGAGTTCGCCGATTCGTTCAATATAAATGGCTGGCCACGAGAGGGGTTAATGAAGAATCCATTTTGCGTTCGTTACCTATAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTTCGTCGTGTGCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTCTCGTCTCATCCTTGTGCACTCAAGGAACGTACATTGTGCGAGAAGATGATCCAGTTAATGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGTTCGACGACCAATGGTGGTCGAGATGGCTTTTTCAACTCTATTACACTAAAACCAGGTGATTTTTGTGGTGAAGAACTATTGACATGGGCGTTGATGCCAAGTTCTAGTTTGAACATGCCTTCTTCTACTCGAACCGTCAGAGCACTTACCGAAGTTGAAGCGTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCCGGACAATTCAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTACTATTCCCATCAATGGAGAACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAACAGCATACAGAGACAGCTTGAGTTCCTATGCAGATTCAATGCAACAATATAACGAATACGATATCGAGCTAGCAGAAGAAAATTACGATGATGACAGCGACAACACCATTGAAGACGAAGACGACATGTCTTCTGCAGACTACAAATCACAGCATCTAGGGGCAACAATTTTGGCTTCAAAGTTTGCTGCCAATACTAGAAGAGGAGTTAATCAAAAGGGTCAAACATCCAAACCTTCAAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA | 2145 | 43.73 | MDRIIQSPASKFRPFRRQLIGSSSDSATGSAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVAITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPITRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASQVLTCLPIFLDCTSLNDTLRQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRDGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSTAYRDSLSSYADSMQQYNEYDIELAEENYDDDSDNTIEDEDDMSSADYKSQHLGATILASKFAANTRRGVNQKGQTSKPSSLKMPKLFKPDEPDFSMDG* | 715 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 34344343 | 34347962 | + | CsaV3_3G042240.1 | Csa03g03918 | 524823 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03918 | 714 | SUPERFAMILY | cAMP-binding domain-like | 386 | 581 | IPR018490 | - | |
Csa03g03918 | 714 | MobiDBLite | consensus disorder prediction | 700 | 714 | - | - | |
Csa03g03918 | 714 | CDD | CAP_ED | 456 | 587 | IPR000595 | - | |
Csa03g03918 | 714 | Pfam | Ion transport protein | 58 | 383 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Csa03g03918 | 714 | SUPERFAMILY | Voltage-gated potassium channels | 49 | 378 | - | - | |
Csa03g03918 | 714 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 37 | 712 | - | - | |
Csa03g03918 | 714 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 456 | 586 | IPR000595 | - | |
Csa03g03918 | 714 | MobiDBLite | consensus disorder prediction | 681 | 714 | - | - | |
Csa03g03918 | 714 | MobiDBLite | consensus disorder prediction | 681 | 697 | - | - | |
Csa03g03918 | 714 | Gene3D | Jelly Rolls | 454 | 574 | IPR014710 | - | |
Csa03g03918 | 714 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 | 37 | 712 | - | - | |
Csa03g03918 | 714 | Pfam | Cyclic nucleotide-binding domain | 479 | 566 | IPR000595 | - | |
Csa03g03918 | 714 | SMART | cnmp_10 | 456 | 587 | IPR000595 | - | |
Csa03g03918 | 714 | Gene3D | Helix hairpin bin | 383 | 447 | - | - | |
Csa03g03918 | 714 | Gene3D | - | 61 | 381 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03918 | Csa-Chr3:34344343 | Csa06g01202 | Csa-Chr6:10197240 | 0 | dispersed | |
Csa06g02572 | Csa-Chr6:22721654 | Csa03g03918 | Csa-Chr3:34344343 | 1.86E-102 | dispersed | |
Csa01g01942 | Csa-Chr1:16308637 | Csa03g03918 | Csa-Chr3:34344343 | 0 | transposed | |
Csa03g04413 | Csa-Chr3:38472710 | Csa03g03918 | Csa-Chr3:34344343 | 0 | transposed | |
Csa01g00161 | Csa-Chr1:1043898 | Csa03g03918 | Csa-Chr3:34344343 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03918 | K05391 | - | csv:101216651 | 1415.21 |