Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03923 ATGGAATCTGGTCGGTTCTTGTTTAATCCGCCACCTTACGGCGGGAACATGCTTTACCTTGGCGGAGCCGGCGGCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGCATGACCATGAATGAAAGTCCAAAAGGGAGGCCATTTTTTAGATCCCCCGATGATCTTTACGATGATGAATATTATGATGAGTTTTACCCTGAGAAGAAGCGACGTCTCACCCACGACCAGGTTCAAATGCTGGAGAAGAACTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAATCCCAACTGGCCAAGAAGCTAGGGCTGCAACCGAGGCAGGTGGCTGTGTGGTTCCAGAATCGTCGTGCTCGGTGGAAGACAAAGCAACTTGAAAGGGACTACGATGTTCTTAAAGCTTCTTATGATTTGCTTGTGTCCAACTATGACTCAATAGTCAAAGAGAATGCAGTTCTTAAATCCGAGGTGGCCTCGTTAACTGAGAAATGTCTAGCTAAAGAGCTAGGTGGAGGAGAAGCAACAATTCCATCTATAACATCAACATCAGAGCTTCTTCTGGCAGACATCACTAATATCTCCGTCCCACACTCCGGCAGAAAGGCTGAAGATCGTCTTAGTTCAGGGAGTGATAGCAGTGCAGTGATCGACGATAATTGTCCACAGCTCATCGACAGTGGTGATTCGTACTTCCCCAACATCGAGTATCCGCAATGTTCAAATCTGCCTAACGGGTTGCATATGGAAGACGACGATACAAACGACAATTGCAACTATTTGTTCTCGGATATGTTTGCAGCAACAAACCAACAGAATCAAGAGGGGAGGCCTCCAGCTTTGTGGGCGTGGCCTTAG 858 47.32 MESGRFLFNPPPYGGNMLYLGGAGGDPCLRGGRTMMSMTMNESPKGRPFFRSPDDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLVSNYDSIVKENAVLKSEVASLTEKCLAKELGGGEATIPSITSTSELLLADITNISVPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPNIEYPQCSNLPNGLHMEDDDTNDNCNYLFSDMFAATNQQNQEGRPPALWAWP* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34379311 34383476 - CsaV3_3G042290.1 Csa03g03923 524828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03923 285 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Csa03g03923 285 Gene3D - 67 130 - -
Csa03g03923 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 265 - -
Csa03g03923 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 265 IPR045224 GO:0003700
Csa03g03923 285 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Csa03g03923 285 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Csa03g03923 285 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Csa03g03923 285 SMART HOX_1 67 128 IPR001356 GO:0003677
Csa03g03923 285 CDD homeodomain 69 125 IPR001356 GO:0003677
Csa03g03923 285 Pfam Homeobox associated leucine zipper 124 164 IPR003106 GO:0006355|GO:0043565
Csa03g03923 285 SUPERFAMILY Homeodomain-like 65 126 IPR009057 -
Csa03g03923 285 Pfam Homeodomain 69 122 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03923 Csa05g02906 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00775 Csa-Chr3:6786423 Csa03g03923 Csa-Chr3:34379311 1.81E-29 dispersed
Csa03g03360 Csa-Chr3:30395800 Csa03g03923 Csa-Chr3:34379311 5.52E-29 dispersed
Csa03g03923 Csa-Chr3:34379311 Csa05g02906 Csa-Chr5:29571581 1.21E-80 dispersed
Csa04g00848 Csa-Chr4:5963449 Csa03g03923 Csa-Chr3:34379311 2.66E-18 dispersed
Csa03g03923 Csa-Chr3:34379311 Csa01g00793 Csa-Chr1:5021575 5.13E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31390 PF00046 Homeodomain 4.50E-18 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03923 K09338 - csv:101212142 558.14