Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03932 | ATGAAAGAAAAGAGTGAAACTGGAGGTGGGTATGTGAGAGCAGATCAAATAGATCTGAAGAGTTTAGATGAGCAGTTACAGAGACATTTGAGCAAAGCATGGACTATGGAGAAGAACAAGAGGAGGGAAGATGAGGAAGGTGTCGGCATCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGAGGAGGTGTTGGCGGTGGAAGACCCGCAATCACTAGACAGGAGTGGGAGATTGACCCTTCCAAACTCATCATCAAAGCTGTCATAGCTCGTGGCACTTTTGGAACTGTTCATCGTGGAGTTTATGATGGTCAAGATGTTGCTGTTAAACTTCTTGACTGGGGAGAAGAGGGTCATAGGTCAGAGGCAGAAATCGCGTCCCTTAGAGCGGCTTTTACGCAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTTATAGGAGCAACAATAGGCTCCTCAGATCTACACATACAAACAGAAAATGGCCAAATTGGCATGCCCAGCAATATTTGTTGTGTTGTTGTTGAATATTGTCCTGGAGGTGCTCTGAAATCCTACCTCATAAAGAACAGAAGGAAAAAGCTGGCTTTCAAAGTAGTCGTCCAGCTAGCTTTAGACCTTGCAAGAGGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGATGTCAAAACAGAAAATATGCTTCTGGACAAAACGAGAACGGTAAAAATTGCAGACTTTGGCGTTGCTCGTGTTGAAGCCTCAAATCCCAATGATATGACTGGTGAGACTGGAACACTTGGGTATATGGCTCCGGAGGTTCTCAATGGCAATCCATATAACAGGAAATGTGATGTCTACAGCTTCGGCATCTGTTTATGGGAGATATACTGCTGCGATATGCCGTATCCCGACCTTAGCTTCTCAGAAGTTACATCAGCTGTTGTCCGACAGAATCTGAGGCCAGAGATTCCTCGGTGTTGCCCCAGCTCGCTTGCAAATGTAATGAAGCGATGCTGGGATGCTAACCCGGACAAGCGTCCAGAGATGGATGAGGTTGTAACCATGTTGGAAGCAATTGATACATCGAAGGGCGGAGGTATGATCCCCCTCGATCAGTCACAAGGCTGTTTTTGCTTCCGTAGGTACCGGGGGCCTTGA | 1158 | 47.06 | MKEKSETGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKRREDEEGVGIGGGGGGGGGGGGVGGGRPAITRQEWEIDPSKLIIKAVIARGTFGTVHRGVYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLHIQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCFCFRRYRGP* | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 34431060 | 34435738 | - | CsaV3_3G042380.1 | Csa03g03932 | 524837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03932 | 385 | SMART | serkin_6 | 82 | 359 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g03932 | 385 | MobiDBLite | consensus disorder prediction | 32 | 69 | - | - | |
Csa03g03932 | 385 | Gene3D | Phosphorylase Kinase; domain 1 | 69 | 166 | - | - | |
Csa03g03932 | 385 | PRINTS | Tyrosine kinase catalytic domain signature | 179 | 192 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03932 | 385 | PRINTS | Tyrosine kinase catalytic domain signature | 217 | 235 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03932 | 385 | PRINTS | Tyrosine kinase catalytic domain signature | 283 | 305 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03932 | 385 | PRINTS | Tyrosine kinase catalytic domain signature | 327 | 349 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03932 | 385 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 1 | 379 | - | - | |
Csa03g03932 | 385 | CDD | STKc_MAP3K-like | 88 | 356 | - | - | |
Csa03g03932 | 385 | Pfam | Protein tyrosine and serine/threonine kinase | 84 | 356 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g03932 | 385 | Gene3D | Transferase(Phosphotransferase) domain 1 | 182 | 372 | - | - | |
Csa03g03932 | 385 | MobiDBLite | consensus disorder prediction | 32 | 48 | - | - | |
Csa03g03932 | 385 | PANTHER | DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED | 1 | 379 | - | - | |
Csa03g03932 | 385 | ProSiteProfiles | Protein kinase domain profile. | 82 | 359 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g03932 | 385 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 223 | 235 | IPR008271 | GO:0004672|GO:0006468 | |
Csa03g03932 | 385 | SUPERFAMILY | Protein kinase-like (PK-like) | 68 | 356 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01303 | Csa-Chr3:9965135 | Csa03g03932 | Csa-Chr3:34431060 | 9.18E-168 | dispersed | |
Csa03g03932 | Csa-Chr3:34431060 | Csa07g01691 | Csa-Chr7:17390292 | 0 | dispersed | |
Csa01g00844 | Csa-Chr1:5290383 | Csa03g03932 | Csa-Chr3:34431060 | 1.85E-68 | wgd | |
Csa01g00159 | Csa-Chr1:1031695 | Csa03g03932 | Csa-Chr3:34431060 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78066 | PF07714 | PK_Tyr_Ser-Thr | 2.70E-64 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03932 | - | - | csv:101212631 | 757.288 |