Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03940 ATGTCTAATAAATATCCTCGTGTAATGGGACCCACCTATGTCCACCTTCCTTGTGTGAGGATTATTGATTATTCATCTTCGCCATTGTTGAGAGGAAGTAAATCGTCGTCGTTTTGGGGAAGAGATTTATGCTTTGGAAATGGAGGTGTTAGGGATGGTCCGAGACCGAGAGCTTCATTCAATGGTCGACTTGTTAAGGTTTTCGCCATGTCGGATACTTCTTCTTCCTCTTTTAAGATGAATCTCAATGAATACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTTGCGATTTCCGTTGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAATCTCATTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGAAGGAGAAAACAGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTTTCTCCTTTTCCTGTTCAACAACTTCTACTTTCAAACGATTTAGATATTTTATTTAATAGAGGTCGAGTGCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCAAATCTACAAACATCTGATGAAAGCAGTGGGAACTCTGGCTTTGCGGCTTTCTCCTCTAATTTTTTAACATCAGAAGGTTGGAAACTTCTTAGAGATCAAAATGAAGATGTAAAATCACACATACAGAGAAACATTCTCACACCTCAAATCGGCCAACTTGTTGGTATATTTACTGAAGATGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTAGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGCTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATCTATGTGGGGTCATGTATACAGACGGAAGCAGATGTTGAGGCTTTGTCAAATAACGTGGGAGTCACCGCTGTACTGAATTTTCAAAGTGCAACTGAGGCAGAAAACTGGGGGATTAATGCCAAGTTAATCAATGAGTCGTGCCTAAAATTTGATATTCTAATGATCAGCTATCCTATCAGAGAAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACCTCTGGTTTTGATCGATCTCCAGCCAGTGTGATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACAAGTTTGCATTCCTGCAAACCTGACAGGCCTGCTATCGCTTGGGCTACCTGGGATCTCATTGCAATGGTGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTCACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCCGTCAAAGCTAGTCACAAGGGTGGACCTAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTACTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGACAGGGGGAATGTCAACAATGTAATAATCATCGGTGACACTGCCAGTGTTAGGCCTTCAGTTCAGCCGCAAAAGAAAGATGCAAATATCGTGAAGGTAATTGAAAGACCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCAGCTCGGTGTGTTGCATTTTCAGTATGTCCAATTAGACTAACTCCCAAGTAG 1800 41.67 MSNKYPRVMGPTYVHLPCVRIIDYSSSPLLRGSKSSSFWGRDLCFGNGGVRDGPRPRASFNGRLVKVFAMSDTSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVNLIEIKDFGDTQMMLKEKTGSFSLVLERPFSPFPVQQLLLSNDLDILFNRGRVPIATWKKEILASNLQTSDESSGNSGFAAFSSNFLTSEGWKLLRDQNEDVKSHIQRNILTPQIGQLVGIFTEDEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALSNNVGVTAVLNFQSATEAENWGINAKLINESCLKFDILMISYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIIIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK* 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34474268 34479827 - CsaV3_3G042460.1 Csa03g03940 524845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03940 599 CDD E_set_AMPKbeta_like_N 466 545 - -
Csa03g03940 599 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 36 598 - -
Csa03g03940 599 SUPERFAMILY PDZ domain-like 67 172 IPR036034 GO:0005515
Csa03g03940 599 SUPERFAMILY E set domains 463 546 IPR014756 -
Csa03g03940 599 Gene3D Immunoglobulins 453 549 IPR013783 -
Csa03g03940 599 ProSiteProfiles Dual specificity protein phosphatase domain profile. 299 458 IPR020422 GO:0006470|GO:0008138
Csa03g03940 599 Pfam Glycogen recognition site of AMP-activated protein kinase 466 547 IPR032640 -
Csa03g03940 599 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 36 598 IPR030066 GO:0005983
Csa03g03940 599 CDD DSP_laforin-like 298 444 IPR045204 GO:0019203|GO:0046838
Csa03g03940 599 Gene3D Protein tyrosine phosphatase superfamily 292 557 IPR029021 -
Csa03g03940 599 Pfam Dual specificity phosphatase, catalytic domain 308 431 IPR000340 GO:0008138|GO:0016311
Csa03g03940 599 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 291 437 IPR029021 -
Csa03g03940 599 ProSiteProfiles PDZ domain profile. 86 167 IPR001478 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03940 Csa-Chr3:34474268 Csa05g02758 Csa-Chr5:28304180 5.30E-30 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03940 - - csv:101214241 1178.7