Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g03950 | ATGGCATTAACAGCCCCAGGACAGCTCAATGTTAATGAATCTCCTTCATGGGGATCTAGAAGTGTCGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTATATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCGATACGAGAAATCAAAATTTTAAAGAAGCTCCATCATGAAAATGTAATCAAGTTGAAAGAGATTGTAACATCTCCAGGTCCTGAGCAGGATGAACAAGGGAAGCCAGATGGTAACAAGTATAAAGGGGGCATCTACATGGTTTTCGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGAATGAGGTTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTGCTGCATAGGGATATAAAAGGCTCAAATCTGTTAATTGACAACGATGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCAGGTCGTTTTCTAACGATCACAATGCAAATCTAACAAATCGTGTGATTACCTTATGGTACAGACCGCCTGAATTGCTGCTTGGGTCAACAAAATATGGTCCAGCAGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTTCATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCCCCAGATGAGGTCAATTGGCCTGGGGTTTCGAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCTATGAAGAGACGTCTCAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAAAAGATGCTCACTCTTGATCCTTCTCAGAGGATTGCTGCGAAGGATGCCCTTGATGCAGAGTATTTTTGGACTGACCCATTACCTTGTGACCCTAAGAGTTTACCCAAGTATGAAGCATCACACGAGTTCCAGACTAAGAAGAAGCGCCAGCAACAACGACAGCATGAAGAAACTGCAAAGCGACAGAAGTTGCAACATGCACAGCATGGACGTCTTCCGCCTATTCAGCAGTCAGGGCAAGCTCATGCACAGATGCGACCGGTAGCTAACCAGCCTATTCATGGGTCTCAACCTCCAATTGCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAATCCTCCTGGATACAACCACCCAAGTCGTGGTAGTCAAGGTGGGGGTGGTTATAGCAACACGCAATATGCTCAAGGACGAGGTGCACCCTATGGATCTGGTAACATGTCCAGTGCTGGTCCTCGAGGTGGAGCTGGAGGTGGTGGTTATGGTGTGGGAGCTTCAAGTTACTCACAGAATGGTCCATATGCTGGTAGTTCTAGTACTGGTCGTGGCTCCAATGTGATGGGTGGAAACCGAAACCAACAATATGGGTGGCAACAGTGA | 1548 | 46.12 | MALTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEQDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNDGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPVANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPPGYNHPSRGSQGGGGYSNTQYAQGRGAPYGSGNMSSAGPRGGAGGGGYGVGASSYSQNGPYAGSSSTGRGSNVMGGNRNQQYGWQQ* | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 34536277 | 34544804 | + | CsaV3_3G042560.1 | Csa03g03950 | 524855 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g03950 | 515 | MobiDBLite | consensus disorder prediction | 432 | 459 | - | - | |
Csa03g03950 | 515 | ProSiteProfiles | Protein kinase domain profile. | 25 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g03950 | 515 | MobiDBLite | consensus disorder prediction | 480 | 515 | - | - | |
Csa03g03950 | 515 | PANTHER | CELL DIVISION PROTEIN KINASE | 5 | 453 | - | - | |
Csa03g03950 | 515 | Pfam | Protein kinase domain | 25 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g03950 | 515 | CDD | STKc_CDK9_like | 25 | 324 | - | - | |
Csa03g03950 | 515 | MobiDBLite | consensus disorder prediction | 337 | 366 | - | - | |
Csa03g03950 | 515 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 5 | 453 | - | - | |
Csa03g03950 | 515 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 159 | 171 | IPR008271 | GO:0004672|GO:0006468 | |
Csa03g03950 | 515 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 121 | - | - | |
Csa03g03950 | 515 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 54 | IPR017441 | GO:0005524 | |
Csa03g03950 | 515 | MobiDBLite | consensus disorder prediction | 373 | 387 | - | - | |
Csa03g03950 | 515 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 332 | IPR011009 | - | |
Csa03g03950 | 515 | Gene3D | Transferase(Phosphotransferase) domain 1 | 122 | 364 | - | - | |
Csa03g03950 | 515 | MobiDBLite | consensus disorder prediction | 335 | 515 | - | - | |
Csa03g03950 | 515 | SMART | serkin_6 | 25 | 324 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01815 | Csa-Chr2:17434982 | Csa03g03950 | Csa-Chr3:34536277 | 4.19E-96 | dispersed | |
Csa03g03950 | Csa-Chr3:34536277 | Csa04g01219 | Csa-Chr4:10816402 | 0 | dispersed | |
Csa05g02229 | Csa-Chr5:25043667 | Csa03g03950 | Csa-Chr3:34536277 | 1.40E-95 | dispersed | |
Csa05g02741 | Csa-Chr5:28151896 | Csa03g03950 | Csa-Chr3:34536277 | 1.90E-87 | dispersed | |
Csa07g00931 | Csa-Chr7:7979653 | Csa03g03950 | Csa-Chr3:34536277 | 3.05E-85 | dispersed | |
Csa03g03950 | Csa-Chr3:34536277 | Csa01g02837 | Csa-Chr1:24909570 | 1.23E-116 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78067 | PF00069 | Pkinase | 1.20E-74 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g03950 | K08819 | - | csv:101215918 | 1014.6 |