Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03950 ATGGCATTAACAGCCCCAGGACAGCTCAATGTTAATGAATCTCCTTCATGGGGATCTAGAAGTGTCGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTATATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCGATACGAGAAATCAAAATTTTAAAGAAGCTCCATCATGAAAATGTAATCAAGTTGAAAGAGATTGTAACATCTCCAGGTCCTGAGCAGGATGAACAAGGGAAGCCAGATGGTAACAAGTATAAAGGGGGCATCTACATGGTTTTCGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGAATGAGGTTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTGCTGCATAGGGATATAAAAGGCTCAAATCTGTTAATTGACAACGATGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCAGGTCGTTTTCTAACGATCACAATGCAAATCTAACAAATCGTGTGATTACCTTATGGTACAGACCGCCTGAATTGCTGCTTGGGTCAACAAAATATGGTCCAGCAGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTTCATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCCCCAGATGAGGTCAATTGGCCTGGGGTTTCGAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCTATGAAGAGACGTCTCAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAAAAGATGCTCACTCTTGATCCTTCTCAGAGGATTGCTGCGAAGGATGCCCTTGATGCAGAGTATTTTTGGACTGACCCATTACCTTGTGACCCTAAGAGTTTACCCAAGTATGAAGCATCACACGAGTTCCAGACTAAGAAGAAGCGCCAGCAACAACGACAGCATGAAGAAACTGCAAAGCGACAGAAGTTGCAACATGCACAGCATGGACGTCTTCCGCCTATTCAGCAGTCAGGGCAAGCTCATGCACAGATGCGACCGGTAGCTAACCAGCCTATTCATGGGTCTCAACCTCCAATTGCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAATCCTCCTGGATACAACCACCCAAGTCGTGGTAGTCAAGGTGGGGGTGGTTATAGCAACACGCAATATGCTCAAGGACGAGGTGCACCCTATGGATCTGGTAACATGTCCAGTGCTGGTCCTCGAGGTGGAGCTGGAGGTGGTGGTTATGGTGTGGGAGCTTCAAGTTACTCACAGAATGGTCCATATGCTGGTAGTTCTAGTACTGGTCGTGGCTCCAATGTGATGGGTGGAAACCGAAACCAACAATATGGGTGGCAACAGTGA 1548 46.12 MALTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEQDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNDGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPVANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPPGYNHPSRGSQGGGGYSNTQYAQGRGAPYGSGNMSSAGPRGGAGGGGYGVGASSYSQNGPYAGSSSTGRGSNVMGGNRNQQYGWQQ* 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34536277 34544804 + CsaV3_3G042560.1 Csa03g03950 524855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03950 515 MobiDBLite consensus disorder prediction 432 459 - -
Csa03g03950 515 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03950 515 MobiDBLite consensus disorder prediction 480 515 - -
Csa03g03950 515 PANTHER CELL DIVISION PROTEIN KINASE 5 453 - -
Csa03g03950 515 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03950 515 CDD STKc_CDK9_like 25 324 - -
Csa03g03950 515 MobiDBLite consensus disorder prediction 337 366 - -
Csa03g03950 515 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 453 - -
Csa03g03950 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Csa03g03950 515 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Csa03g03950 515 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Csa03g03950 515 MobiDBLite consensus disorder prediction 373 387 - -
Csa03g03950 515 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Csa03g03950 515 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Csa03g03950 515 MobiDBLite consensus disorder prediction 335 515 - -
Csa03g03950 515 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01815 Csa-Chr2:17434982 Csa03g03950 Csa-Chr3:34536277 4.19E-96 dispersed
Csa03g03950 Csa-Chr3:34536277 Csa04g01219 Csa-Chr4:10816402 0 dispersed
Csa05g02229 Csa-Chr5:25043667 Csa03g03950 Csa-Chr3:34536277 1.40E-95 dispersed
Csa05g02741 Csa-Chr5:28151896 Csa03g03950 Csa-Chr3:34536277 1.90E-87 dispersed
Csa07g00931 Csa-Chr7:7979653 Csa03g03950 Csa-Chr3:34536277 3.05E-85 dispersed
Csa03g03950 Csa-Chr3:34536277 Csa01g02837 Csa-Chr1:24909570 1.23E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78067 PF00069 Pkinase 1.20E-74 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03950 K08819 - csv:101215918 1014.6