Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g03960 ATGGCTTCCACTTTCACCCATTTCTATGGAGTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTTCTCTCTCAGATCCCCGAATATCCCAATCCGGAAGTATCTGTGGAACTCTCAAGCCTCCACCTTCATCCAGATTTATCCCAACCTTCATCGAAGAAATGGAAGCCATATCCGAGCTTCTCACTACTCGCTCTTGGACAACTCACTTCGTCAATTCCACTCCACCGATGTTCGCATTATCTCAATGCTTCAACGATCTCTCTCACACCGATTGCCTTCTCTGCTACGCTGCCAGCCGTACCTCCCTTCCCCGTTGTCTCCCTGCCATCTCCGCTCGGATCTTCCTTGATGGTTGCTTCCTCCGGTATGATAATTACAGCTTCTATAAAGAATCCACTGATTCGGTTAGGGATTCGGTGAATTGCACCTCGGAACTGGGGGAAATCGATCAATCTGAGAGGTTAGTGTTCGGGGAGAATGTTAGGGTTGTTGTTGAGACTGTGACGACGAAGGCTATGGAGAAGGGTGGATTTGGGATGGGGGAAGTTAGTGGGATGTTTGGTTTGGCGCAGTGTTGGGGGAGTGTTGAACCTGAGGGATGCAGGGCTTGCTTGGAGAAGGCGAAGAGGAGTATTGGGAGTTGTTTGCCGAGTAAAGAAGGAAGGGCTATGAATGCTGGGTGTTATTTGAGATATTCAACTGTGAAATTCTATAATGATAAGGATGAAGATCGGGATCATGATGGATTTTCTGGAAGAAGAGCTGTAGTTACCATTGCCTTAGCTTCAGCTGCCTCCTTGATCATCTTCTTTTCAGCTGTGTTTGCGTGTTATACAAGAATTTCAAAGTTCAAGAAAGAAAAGAAAAGGCAATCCCTCATTCCAGTTTCGCTTAAGGATTCCGATTTGAACTTCAAGTATGAAACACTTGAAAAGGCAACTAATTACTTCAACCTATCAAATAAGATAGGCCAAGGTGGAGCTGGTTCTGTATATAAAGGGACTCTTCCAAATGGGCAGATTGTTGCTGTGAAGAGATTGGTTTTCCATACAAGGCAATGGGTTGATGAGTTCTTCAATGAGGTGAATTTGATCCGCGGAATCCAACACAAAAACCTTGTTGCTCTTTTGGGTTGCAGCATTGAAGGGCCTGAAAGTCTGCTCGTCTACGAGTTTGTTTCGAACGGGAGCCTTGATCATTTCATTTTCGATAAGAACAAGGCTCAGATTCTAAGCTGGAAGCAGCGTTTTAATATTATAGTGGGAACAGCTGAGGGGCTTGCACATCTTCATGAAGGTTGTAAAATAAGAATAATCCATAGAGACATAAAGAGTAGCAATGTTCTACTGGATGAAAATTTCAACCCAAAGATAGCGGATTTTGGCCTCGCTCGGCATTTTGGAGCCGATCAGTCTCATCTTAGCACAGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAATATCTTGTTCGAGGACAACTTACAGAAAAAGCAGATGTTTATAGTTTCGGGGTGTTGATACTCGAGATAGTCTGCGGTAGAAGAAACAGTTCCTTTACTGAGAACTCCACCCCACTCCTCCAAACAGTTTGGGATCTGTACAAAACAGAAAGATTAACCGAAGCCATTGACACAAGCCTGAACAAGGATTACCCTGCAAAAGAAGCCATGGATATTCTACAAATAGGACTTTTATGCACACAAGCTCTAGCTTCTTTGAGACCGTCAATGGCAACGATAGTGAAACTGTTAACAAGTGATGTAGAACGGAAGGTTGGCATCCCAGAACAACCTCCATTTCTGAATCCTTGTGGAACTTCAAAAAGGTCTTGCAGGATTAGCAGCTTGGTATCTCATGCAGTTTCCAAACTTGAAGTTTCTTCTTGCACATCAACAGATTCAGGTTTCTCTTCTAACTTGCCTTCAAGAAGTGGAGATTTTGCTGAACTGAATTCAAATTGA 1974 43.67 MASTFTHFYGVPFFFFFFFFFFSVSLSDPRISQSGSICGTLKPPPSSRFIPTFIEEMEAISELLTTRSWTTHFVNSTPPMFALSQCFNDLSHTDCLLCYAASRTSLPRCLPAISARIFLDGCFLRYDNYSFYKESTDSVRDSVNCTSELGEIDQSERLVFGENVRVVVETVTTKAMEKGGFGMGEVSGMFGLAQCWGSVEPEGCRACLEKAKRSIGSCLPSKEGRAMNAGCYLRYSTVKFYNDKDEDRDHDGFSGRRAVVTIALASAASLIIFFSAVFACYTRISKFKKEKKRQSLIPVSLKDSDLNFKYETLEKATNYFNLSNKIGQGGAGSVYKGTLPNGQIVAVKRLVFHTRQWVDEFFNEVNLIRGIQHKNLVALLGCSIEGPESLLVYEFVSNGSLDHFIFDKNKAQILSWKQRFNIIVGTAEGLAHLHEGCKIRIIHRDIKSSNVLLDENFNPKIADFGLARHFGADQSHLSTGIAGTLGYMAPEYLVRGQLTEKADVYSFGVLILEIVCGRRNSSFTENSTPLLQTVWDLYKTERLTEAIDTSLNKDYPAKEAMDILQIGLLCTQALASLRPSMATIVKLLTSDVERKVGIPEQPPFLNPCGTSKRSCRISSLVSHAVSKLEVSSCTSTDSGFSSNLPSRSGDFAELNSN* 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34624574 34628501 + CsaV3_3G042660.1 Csa03g03960 524865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g03960 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Csa03g03960 657 SMART serkin_6 320 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03960 657 Gene3D Phosphorylase Kinase; domain 1 280 395 - -
Csa03g03960 657 Gene3D Transferase(Phosphotransferase) domain 1 396 597 - -
Csa03g03960 657 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 18 642 - -
Csa03g03960 657 ProSiteProfiles Gnk2-homologous domain profile. 31 131 IPR002902 -
Csa03g03960 657 ProSiteProfiles Protein kinase domain profile. 320 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g03960 657 SUPERFAMILY Protein kinase-like (PK-like) 298 588 IPR011009 -
Csa03g03960 657 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 18 642 - -
Csa03g03960 657 Pfam Salt stress response/antifungal 72 129 IPR002902 -
Csa03g03960 657 Pfam Salt stress response/antifungal 155 237 IPR002902 -
Csa03g03960 657 Gene3D - 37 131 IPR038408 -
Csa03g03960 657 Gene3D - 144 240 IPR038408 -
Csa03g03960 657 ProSiteProfiles Gnk2-homologous domain profile. 140 240 IPR002902 -
Csa03g03960 657 Pfam Protein tyrosine and serine/threonine kinase 321 588 IPR001245 GO:0004672|GO:0006468
Csa03g03960 657 CDD STKc_IRAK 326 589 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g03960 Csa05g02318 CCT
Csa03g03960 Csa05g02318 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01762 Csa-Chr2:17182714 Csa03g03960 Csa-Chr3:34624574 5.94E-86 dispersed
Csa03g03960 Csa-Chr3:34624574 Csa06g03551 Csa-Chr6:28857428 4.21E-101 dispersed
Csa03g01914 Csa-Chr3:14845713 Csa03g03960 Csa-Chr3:34624574 3.33E-77 transposed
Csa03g03960 Csa-Chr3:34624574 Csa05g02318 Csa-Chr5:25639895 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78069 PF00069 Pkinase 1.70E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g03960 - - csv:101218775 1266.14